PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G039400.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 315aa    MW: 34467.6 Da    PI: 4.5925
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G039400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.6e-18105154255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +++G+r+++ +g+W+AeIrdp++     r++lg++ ++eeAa+a++  +++++g
  Sevir.4G039400.3.p 105 QFRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTYNSPEEAARAYDVEARRIRG 154
                         69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-21105164IPR016177DNA-binding domain
SMARTSM003801.7E-34105168IPR001471AP2/ERF domain
PROSITE profilePS5103223.762105162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-30105164IPR001471AP2/ERF domain
CDDcd000186.66E-30105163No hitNo description
PfamPF008472.8E-11106154IPR001471AP2/ERF domain
PRINTSPR003678.5E-10106117IPR001471AP2/ERF domain
PRINTSPR003678.5E-10128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MCGGAVLRGC IPRRARPGQR VTAGQLWPEI KKPRSTGAEE KKRAREDEEF EAAFAEFEVE  60
SGESEVESED EAKSLAAPRS VVARDELNTI AAGVDGPDAR KKKNQFRGIR RRPWGKWAAE  120
IRDPRKGVRV WLGTYNSPEE AARAYDVEAR RIRGKKAKVN FPDEAPVASQ KRLAEPTSVK  180
VANMGTEENL VINNMTNANA NHTIPEPIMQ TQNMSFAPMV NTAASIQEPL ANLSSDQEVD  240
ESAFLQGTSK AVVPPVTGDA SVDLPEFEPY MNFLMDSPDE PVNPILDCDG SQDVGGNMDL  300
WSFDDMPMPG GGFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-201051691479Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G039400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964607.10.0ethylene-responsive transcription factor 1
SwissprotQ6K7E63e-84ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLK3XYD30.0K3XYD3_SETIT; Uncharacterized protein
STRINGSi006802m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.28e-33ERF family protein
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]