PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G037700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 206aa    MW: 21491.7 Da    PI: 4.4863
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G037700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-182171155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ykGVr++k +grW++eIr p++   r r++lg+++t+e+Aa+a + a+ +l+g
  Sevir.4G037700.1.p 21 TKYKGVRRRK-WGRWASEIRLPNS---RERIWLGSYDTPEKAARAFDGAAVCLRG 71
                        69*****998.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-112171IPR001471AP2/ERF domain
CDDcd000181.02E-252181No hitNo description
SuperFamilySSF541712.68E-182281IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.1E-262281IPR001471AP2/ERF domain
PROSITE profilePS5103222.5762281IPR001471AP2/ERF domain
SMARTSM003802.5E-282287IPR001471AP2/ERF domain
PRINTSPR003672.4E-92334IPR001471AP2/ERF domain
PRINTSPR003672.4E-94561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSSLPPPPEQ PHAGSSSGEE TKYKGVRRRK WGRWASEIRL PNSRERIWLG SYDTPEKAAR  60
AFDGAAVCLR GPGGADGLNF PGSPPAVAGL TTDPEEVRAA AMSHANKVPT SFTGAPSSEV  120
TERAEPTPAG TAAVPAPAPL QVSTETFDSW SELMANPLPL FSPTVVGSHA HLPAESLTPA  180
TDVDMDETES DSCPGLWSFD SGDAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1419811172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12329KGVRRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G037700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966651.11e-133ethylene-responsive transcription factor ERF017
TrEMBLK3Y3021e-132K3Y302_SETIT; Uncharacterized protein
STRINGSi008587m1e-133(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.13e-38ERF family protein