PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G037600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 205aa    MW: 21768.2 Da    PI: 4.2497
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G037600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.8e-191464256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                        +ykGVr +k +grWv+eIr p     +   r++lg+++t+e+Aa+a +aa ++l+g+
  Sevir.4G037600.1.p 14 KYKGVRLRK-WGRWVSEIRLP-----HsrERIWLGSYDTPEKAARAFDAAYLCLRGP 64
                        8******99.**********7.....335*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-251373IPR001471AP2/ERF domain
CDDcd000183.25E-261473No hitNo description
PfamPF008475.5E-111463IPR001471AP2/ERF domain
SMARTSM003801.6E-281479IPR001471AP2/ERF domain
PROSITE profilePS5103221.7731473IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-181473IPR016177DNA-binding domain
PRINTSPR003677.0E-91526IPR001471AP2/ERF domain
PRINTSPR003677.0E-93753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MQPSAAAVAS GERKYKGVRL RKWGRWVSEI RLPHSRERIW LGSYDTPEKA ARAFDAAYLC  60
LRGPAGVDGL NFPGSPPDVG RTSDPNEVYA AAVSHADTAD AAALWDDAAE PPSEMLAHDD  120
GAPAPALSPP LQVSVPSFDW SEELLADLPP LFSPAEVMSH AYLLPVSPAA ADVTMEENDS  180
CSPCPGLWSF DSSGDSPITD HVDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-13173172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G037600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126144e-41CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966650.11e-128ethylene-responsive transcription factor ERF018
TrEMBLA0A368QQK21e-127A0A368QQK2_SETIT; Uncharacterized protein
STRINGSi008104m1e-125(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.15e-33ERF family protein