PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G037400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 192aa    MW: 20703.1 Da    PI: 5.7482
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G037400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.51.1e-152068355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ykGVr++k +g+Wv+e+r p++   r r++lg++ t+e+Aa+a +aa ++l+g
  Sevir.4G037400.1.p 20 YKGVRQRK-SGSWVSEVRLPNS---RERIWLGSYYTPEKAARAFDAASLCLRG 68
                        9*******.7******999833...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.9941978IPR001471AP2/ERF domain
CDDcd000181.18E-221980No hitNo description
SMARTSM003803.3E-231984IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-241979IPR001471AP2/ERF domain
PfamPF008471.5E-92068IPR001471AP2/ERF domain
PRINTSPR003671.4E-62031IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-152079IPR016177DNA-binding domain
PRINTSPR003671.4E-64258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MSLPPEQPHE RRSPSGEMNY KGVRQRKSGS WVSEVRLPNS RERIWLGSYY TPEKAARAFD  60
AASLCLRGPG GADGLNFPSS PPAVRRRTND RKEVLAAALS HANQSAATES PSANGGAPME  120
RVPTLPPAEP KVSPEAESTD WSQLLPPMPS PIRMGSHTYL PVSPTAAAAE DVDMEEEDSG  180
SCYGLWSPSF W*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G037400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966649.11e-124ethylene-responsive transcription factor ERF017
SwissprotQ84QC29e-28ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLK3Y1P21e-123K3Y1P2_SETIT; Uncharacterized protein
STRINGSi008108m1e-124(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.12e-29ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]