PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.4G037300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 227aa MW: 23993.4 Da PI: 7.2367 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.9 | 4.5e-17 | 25 | 74 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GV+++ + grWv+eIr p++ r r++lg+f+t+e+Aa+a +aa +l+g Sevir.4G037300.1.p 25 RYRGVWRR-RLGRWVSEIRLPNS---RDRIWLGSFDTPEKAARAFDAALVCLRG 74 7****755.59*********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.798 | 25 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.0E-27 | 25 | 90 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-24 | 25 | 84 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.5E-9 | 25 | 74 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.79E-17 | 25 | 84 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.4E-7 | 26 | 37 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.87E-19 | 35 | 84 | No hit | No description |
PRINTS | PR00367 | 6.4E-7 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MPATGSSSST PARDRNEPSP SGQRRYRGVW RRRLGRWVSE IRLPNSRDRI WLGSFDTPEK 60 AARAFDAALV CLRGPGAVHG LNFPGSPPDV GRRTSDSREV CAAAVWHANH ATTPANDDGA 120 PMERVAAASH HASQAAGAAA APEHDRGGVP VESVAAPAPL QLSAQRLDWS QLVANPPPLY 180 SPTVTGSHTY LPISSTAAPP DDLDENDDRP CPGLWSFDSG GSCSRH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.4G037300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966648.1 | 1e-161 | ethylene-responsive transcription factor ERF015 | ||||
TrEMBL | K3Y2A1 | 1e-160 | K3Y2A1_SETIT; Uncharacterized protein | ||||
STRING | Si008323m | 1e-161 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 3e-22 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.4G037300.1.p |