PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G032800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 616aa    MW: 64658.6 Da    PI: 7.6351
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G032800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32.1e-30264323159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh+
  Sevir.4G032800.1.p 264 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCPVRKQVQRCADDMSILITTYEGTHNHP 323
                         58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.1E-32249323IPR003657WRKY domain
SuperFamilySSF1182902.22E-27257324IPR003657WRKY domain
PROSITE profilePS5081128.311259325IPR003657WRKY domain
SMARTSM007743.4E-37264324IPR003657WRKY domain
PfamPF031062.9E-27265323IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MIKGEKQLGS HEEQLTDEIK DDDHIPEGYL FKSLHKSSSR KEACSPNPRE RSQMDEAPNQ  60
TSTKLNAHSK VEEDKLASTR AEMGEVREEN NRLKTMLSRI VEDYRSLQLH FHDVLQQRQG  120
KKLADPTTAM PTNIEEPEFV SLSLGTSTSM RKKEGKNTSV YEGEGREDFM DTKEGGLSLG  180
LSDCKVGATN NAKIQPDELI LSPQGSSEDA KDDALEAADQ QWPPSKTLKN LRSVGAEAED  240
DIGPMQQAKK ARVSVRARCD APTMNDGCQW RKYGQKIAKG NPCPRAYYRC TVAAGCPVRK  300
QVQRCADDMS ILITTYEGTH NHPLSASATA MASTTSAAAS MLTSGSSTSL RFPAASSAAG  360
LSFGFPSAPH DASKHFFLPN GGAASITSTP SYPTITLDLT SPAAATSQAF SLSNRFSSSF  420
GHGATRYHPT SFSFSNSGPS ALSGAAWPAA GGAGYLSYGS PAASLFNGRQ KGGELPAVLH  480
QQQQKASASG SSPPAGVLTD TIAKAITSDP GFHTALAAAI TSYVGTQGSK SPAGGDGGSQ  540
TQGLLKWGQH LGLGPSPSSA GAACSSAAML ARSSPTTAAA AEQKGSNGHR SFLQPSLGLS  600
GSHSASTSPV ENREH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-202643261778Probable WRKY transcription factor 4
2lex_A2e-202643261778Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G032800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964541.10.0probable WRKY transcription factor 72
TrEMBLA0A368QQA30.0A0A368QQA3_SETIT; Uncharacterized protein
STRINGSi006217m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50473862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.15e-63WRKY DNA-binding protein 72