PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.4G005900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 213aa MW: 23752.1 Da PI: 10.3701 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 82.7 | 3.6e-26 | 32 | 134 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+kv tpsdv+k++rlv+pk+ ae+h ++++ l + d +g W+++++y+ +s++yv+tkGW+++v++++L +gD+v F+ Sevir.4G005900.1.p 32 FEKVVTPSDVGKLNRLVVPKHLAEKHlplpgAAARAGGTVLCFHDARGgeAAWRFRYSYWSSSQSYVMTKGWSRYVRDKRLAAGDTVSFY- 121 99***************************98555678899*****9998999**************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 r++++l++ +r+ Sevir.4G005900.1.p 122 --RDGARLFIDCRRR 134 ..5667788988886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-33 | 25 | 134 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.09E-27 | 27 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.08E-18 | 31 | 125 | No hit | No description |
SMART | SM01019 | 1.7E-18 | 32 | 135 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.196 | 32 | 135 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.1E-23 | 32 | 134 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MALTLALESS SSSRGEGGGD GHGSCRPRES MFEKVVTPSD VGKLNRLVVP KHLAEKHLPL 60 PGAAARAGGT VLCFHDARGG EAAWRFRYSY WSSSQSYVMT KGWSRYVRDK RLAAGDTVSF 120 YRDGARLFID CRRRRRAGVV PAVPPRQPQQ AFFFHNQQQA AVQPQQHLVV APRVVVVDDE 180 VEEARRRRCL RLFGVNLELE LRAEPLLLDL QL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 3e-40 | 29 | 134 | 11 | 117 | DNA-binding protein RAV1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.4G005900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP000616 | 1e-75 | AP000616.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0514G12. | |||
GenBank | AP001129 | 1e-75 | AP001129.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0644B06. | |||
GenBank | AP014962 | 1e-75 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | KC019172 | 1e-75 | KC019172.1 Oryza sativa Indica Group cultivar TN1 insect-resistance protein (BPH29) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022681403.1 | 1e-153 | B3 domain-containing protein Os06g0107800 | ||||
Swissprot | Q5VS55 | 3e-56 | Y6078_ORYSJ; B3 domain-containing protein Os06g0107800 | ||||
TrEMBL | K3Y2S9 | 1e-152 | K3Y2S9_SETIT; Uncharacterized protein | ||||
STRING | Si008509m | 1e-153 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12947 | 29 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 9e-39 | related to ABI3/VP1 1 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.4G005900.1.p |