PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G004600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 324aa    MW: 35278.7 Da    PI: 7.2093
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G004600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.37.4e-1370114147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r +WT+ E++++++a +++  + Wk+I +++g  +t  q++s+ qky
  Sevir.4G004600.1.p  70 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 114
                         789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.14E-1664120IPR009057Homeodomain-like
PROSITE profilePS5129414.62865119IPR017930Myb domain
TIGRFAMsTIGR015571.1E-1868117IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.6E-669110IPR009057Homeodomain-like
SMARTSM007172.7E-1069117IPR001005SANT/Myb domain
PfamPF002491.2E-1070114IPR001005SANT/Myb domain
CDDcd001677.83E-872115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MVSMSTTPHP LDSSVPGVGG GGGGGGGEGK EAARRVRLVQ AAAPTAVPLG DEDDEGPRRV  60
RKPYTITKSR ESWTEPEHDK FLEALQLFDR DWKKIEAYVG SKTVIQIRSH AQKYFLKVQK  120
NGTGEHLPPP RPKRKAAHPY PHKASKKALQ VVLPQQASHI MEQGCGTSMD TATVATDLSA  180
NDAFLSWEND PVQQFSPRHT QGSGATNNCS SSMGSQSGTW PTSEATEQAV MLPALRAMPD  240
FARVYSFLGS IFDPETNGHL QKLKEMDPID AETVLLLMKN LSINLTSPNF EEHRRLLASH  300
DSSMDQDVGS SHTVHLPFMI TSK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G004600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964289.10.0protein REVEILLE 6 isoform X1
SwissprotQ8H0W34e-95RVE6_ARATH; Protein REVEILLE 6
TrEMBLK3XYA00.0K3XYA0_SETIT; Uncharacterized protein
STRINGSi006883m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.22e-81MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]