PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G004100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GRAS
Protein Properties Length: 565aa    MW: 59588.8 Da    PI: 6.3016
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G004100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS239.21.7e-731955612374
                GRAS   2 velLlecAeavssgdlelaqalLarlsel....aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                         v+ Lle+A+  +sgd + a+++Larl+++      p g +p+ R+aa++  AL +rl+ + + l    p s +s+ +++ +laa+k++  +
  Sevir.4G004100.1.p 195 VDELLEAARRADSGDSTGAREILARLNHRlptpPPPLGqSPLLRAAAHLRDALLRRLLVTPPALP---PGSVSSPLDVALKLAAHKALAGA 282
                         678*************************987665677778******************9333333...4444455569************* PP

                GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa...sRp....egppslRiTgvgspesgskeeleetgerLakfAee 171
                         sP+++f+ +t  qa+l+a+ g++rvH++D+d++ G+ Wp+L+q+La    R+     +pp +++T+++sp s +  el+ t+e L++fA+ 
  Sevir.4G004100.1.p 283 SPTVQFASFTSTQALLDALGGARRVHVVDLDVGFGARWPPLMQELAlqwRRSsaaqLPPPGMKVTALVSPGSAHPLELRLTHESLTRFAAD 373
                         **********************************************54223355444599******************************* PP

                GRAS 172 lgvpfefnvlvakrledle.leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                         lg++fef+++  + ++  + +   +  pgEa+aV+l l   +          + +++L++vk+l+P vvv++++ + +++ ++ ++ l+ +
  Sevir.4G004100.1.p 374 LGIRFEFSAVGFDPFDPSSpPVGVSAAPGEAVAVHLPLGSGTST--------PAPATLRVVKQLRPAVVVCIDHGCHRGDLPLSHHALNVV 456
                         *********9666666554134567778**********776665........4578*********************************** PP

                GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                         +  +a+++sl+a  ++ +++ +kvE+ +l+++++ ++     +       +  W+++l +aGF+pv+ls+ a++qa++llr+++  g++ve
  Sevir.4G004100.1.p 457 RSSAAFLESLDAA-GAPADAVAKVEQYILRPRVERLLLLGDCR-------MPPWQAMLASAGFSPVQLSSAAEAQAECLLRRTATPGFHVE 539
                         **********988.7888999****************998876.......89*************************************** PP

                GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
                         +++ +l l W++ +Lv+vSaW+
  Sevir.4G004100.1.p 540 KRQTALALRWQQSELVTVSAWQ 561
                         *********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.006168541IPR005202Transcription factor GRAS
PfamPF035146.0E-71195561IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MSPSPIQSQA SCHTNSNIIT SDSDAIQSPH ADAVHSNAPP IDMISALPMS NLHDGRAGDG  60
QDEAPAVFPS PATKRLRMSP PPEPTSVLYN RSPSPPTSSS LASSSAPEPP PISAEDWEAV  120
LSGDMAAPPA AARSSQDSCF LRWIMDADAQ VDAFDPFLAP PPCQEPCFLQ LQPQPQPQPP  180
PPLAAADDLE PRAVVDELLE AARRADSGDS TGAREILARL NHRLPTPPPP LGQSPLLRAA  240
AHLRDALLRR LLVTPPALPP GSVSSPLDVA LKLAAHKALA GASPTVQFAS FTSTQALLDA  300
LGGARRVHVV DLDVGFGARW PPLMQELALQ WRRSSAAQLP PPGMKVTALV SPGSAHPLEL  360
RLTHESLTRF AADLGIRFEF SAVGFDPFDP SSPPVGVSAA PGEAVAVHLP LGSGTSTPAP  420
ATLRVVKQLR PAVVVCIDHG CHRGDLPLSH HALNVVRSSA AFLESLDAAG APADAVAKVE  480
QYILRPRVER LLLLGDCRMP PWQAMLASAG FSPVQLSSAA EAQAECLLRR TATPGFHVEK  540
RQTALALRWQ QSELVTVSAW QCSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-2223856058378Protein SCARECROW
5b3h_A3e-2223856057377Protein SCARECROW
5b3h_D3e-2223856057377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G004100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964284.10.0scarecrow-like protein 6
TrEMBLA0A368QPH80.0A0A368QPH8_SETIT; Uncharacterized protein
STRINGSi006258m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145372224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.19e-64GRAS family protein