PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.4G003500.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 340aa MW: 39398.1 Da PI: 6.9959 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 177.7 | 3.1e-55 | 14 | 148 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL+ k ++e++ewyfFs++dkky+tg+r+nrat++g+Wka Sevir.4G003500.2.p 14 VPPGFRFHPTDEELVDYYLRKKVASRRIDL-NVIKDVDLYKIEPWDLQdKcrlggPGEEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKA 103 69****************************.99**************944655542334677***************************** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 tg+dk+++++ +++lvg++ktLv+ykgrap+g+k+dW+mheyrle Sevir.4G003500.2.p 104 TGRDKPIYANkQRQLVGMRKTLVYYKGRAPNGHKSDWIMHEYRLE 148 ********9856777****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.28E-60 | 7 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.341 | 14 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-28 | 15 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MGMSSTQAQT QQLVPPGFRF HPTDEELVDY YLRKKVASRR IDLNVIKDVD LYKIEPWDLQ 60 DKCRLGGPGE EEQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKPI YANKQRQLVG 120 MRKTLVYYKG RAPNGHKSDW IMHEYRLETN ENGPPQEEGW VVCRVFKKRL PTTRRESDHD 180 APCWYVDEDG PFMHDLNSPM SRMPPHHSMA QLQEQHLQML NNTYKRELKL QFHMPSHHVL 240 STIPHELESP SFHSLLVSPD HQTNVHHAHQ HVQLMEHAVD QVTDWRVLDK FVASQLSHDA 300 TKGVDYTGEG DIIQVNEKQE VATDYASTST SSSQVDPWK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-53 | 1 | 169 | 7 | 169 | NAC domain-containing protein 19 |
3swm_B | 4e-53 | 1 | 169 | 7 | 169 | NAC domain-containing protein 19 |
3swm_C | 4e-53 | 1 | 169 | 7 | 169 | NAC domain-containing protein 19 |
3swm_D | 4e-53 | 1 | 169 | 7 | 169 | NAC domain-containing protein 19 |
3swp_A | 4e-53 | 1 | 169 | 7 | 169 | NAC domain-containing protein 19 |
3swp_B | 4e-53 | 1 | 169 | 7 | 169 | NAC domain-containing protein 19 |
3swp_C | 4e-53 | 1 | 169 | 7 | 169 | NAC domain-containing protein 19 |
3swp_D | 4e-53 | 1 | 169 | 7 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.4G003500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT075091 | 0.0 | KT075091.1 Panicum virgatum secondary wall NAC master switch (SWN7B) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004964278.1 | 0.0 | NAC domain-containing protein 105 | ||||
Swissprot | Q9FWX2 | 1e-107 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | K3XY21 | 0.0 | K3XY21_SETIT; Uncharacterized protein | ||||
STRING | Si006829m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 6e-97 | NAC 007 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.4G003500.2.p |
Publications ? help Back to Top | |||
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