PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G003500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 340aa    MW: 39398.1 Da    PI: 6.9959
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G003500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.73.1e-55141481129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                         +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL+ k       ++e++ewyfFs++dkky+tg+r+nrat++g+Wka
  Sevir.4G003500.1.p  14 VPPGFRFHPTDEELVDYYLRKKVASRRIDL-NVIKDVDLYKIEPWDLQdKcrlggPGEEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKA 103
                         69****************************.99**************944655542334677***************************** PP

                 NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                         tg+dk+++++ +++lvg++ktLv+ykgrap+g+k+dW+mheyrle
  Sevir.4G003500.1.p 104 TGRDKPIYANkQRQLVGMRKTLVYYKGRAPNGHKSDWIMHEYRLE 148
                         ********9856777****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-607168IPR003441NAC domain
PROSITE profilePS5100560.34114168IPR003441NAC domain
PfamPF023651.3E-2815147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGMSSTQAQT QQLVPPGFRF HPTDEELVDY YLRKKVASRR IDLNVIKDVD LYKIEPWDLQ  60
DKCRLGGPGE EEQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKPI YANKQRQLVG  120
MRKTLVYYKG RAPNGHKSDW IMHEYRLETN ENGPPQEEGW VVCRVFKKRL PTTRRESDHD  180
APCWYVDEDG PFMHDLNSPM SRMPPHHSMA QLQEQHLQML NNTYKRELKL QFHMPSHHVL  240
STIPHELESP SFHSLLVSPD HQTNVHHAHQ HVQLMEHAVD QVTDWRVLDK FVASQLSHDA  300
TKGVDYTGEG DIIQVNEKQE VATDYASTST SSSQVDPWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-5311697169NAC domain-containing protein 19
3swm_B4e-5311697169NAC domain-containing protein 19
3swm_C4e-5311697169NAC domain-containing protein 19
3swm_D4e-5311697169NAC domain-containing protein 19
3swp_A4e-5311697169NAC domain-containing protein 19
3swp_B4e-5311697169NAC domain-containing protein 19
3swp_C4e-5311697169NAC domain-containing protein 19
3swp_D4e-5311697169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G003500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0750910.0KT075091.1 Panicum virgatum secondary wall NAC master switch (SWN7B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964278.10.0NAC domain-containing protein 105
SwissprotQ9FWX21e-107NAC7_ARATH; NAC domain-containing protein 7
TrEMBLK3XY210.0K3XY21_SETIT; Uncharacterized protein
STRINGSi006829m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121023039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.16e-97NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]