PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G001100.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 602aa    MW: 65531.1 Da    PI: 4.9764
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G001100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.87.6e-48141441128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lp+GfrF+Ptdeelv++yLk+k++g+ ++    i++vd+  +ePw+Lp k  +++++ ew+fF++ d+ky+ g+r+nr+t++gyWkatgkd
  Sevir.4G001100.2.p  14 LPVGFRFRPTDEELVCHYLKPKIAGRVHPDLLLIPDVDLSACEPWELPaKaLIRSDDPEWFFFAPLDRKYPGGHRSNRSTAAGYWKATGKD 104
                         79*************************999888***************5346667888********************************* PP

                 NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + + s+  g+l+g+kktLvf++grap+g++t+W+mheyr 
  Sevir.4G001100.2.p 105 RLIRSRpAGTLIGIKKTLVFHRGRAPRGHRTSWIMHEYRT 144
                         *****989999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-5313165IPR003441NAC domain
PROSITE profilePS5100554.54314165IPR003441NAC domain
PfamPF023651.9E-2615143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MPSPPPPPPP PGALPVGFRF RPTDEELVCH YLKPKIAGRV HPDLLLIPDV DLSACEPWEL  60
PAKALIRSDD PEWFFFAPLD RKYPGGHRSN RSTAAGYWKA TGKDRLIRSR PAGTLIGIKK  120
TLVFHRGRAP RGHRTSWIMH EYRTAEPQLQ QGQNGSFVLY RLFDKHEEEE PEAADAADSP  180
STSSAADPPP IAPAVKAENL CQPASAKMAH LLTTLSNNEP TAAQEGDPLL DVLAQLPDLQ  240
PEQTYDGFPT ITSPMRPYTD HPFLGNVGGQ DLSAYIDSII AHQDLEDLLV NPSLAKTVEH  300
PTGNFEPIPT SLLVPSSSSS NNNRSPENSW ANLDTERLLL IQGADGTDAA ACCSSATKIL  360
QFDTGDANHD TGPQTDSASG VSAEASHLYN QYQLQSASIP QMELARSDMT DSDAFNGLEG  420
SAPEPLMQQL SVSNFTDPHQ GTALRRIRLV HSIQRASVTE PVLTSNSEGE DEERSCYSTD  480
NSSTNNEDYA NAGGAMHSQG GGVIPTQVVS STEVTGELQD FIFDEGASSL HGVVRHGGNL  540
KRRLKEEYME TNQDAGEILQ HSIRVPREPS LRRRQRISSV VRVLCLALVV ILVFVGLWKC  600
I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-431317016170NO APICAL MERISTEM PROTEIN
1ut4_B6e-431317016170NO APICAL MERISTEM PROTEIN
1ut7_A6e-431317016170NO APICAL MERISTEM PROTEIN
1ut7_B6e-431317016170NO APICAL MERISTEM PROTEIN
3swm_A6e-431317019173NAC domain-containing protein 19
3swm_B6e-431317019173NAC domain-containing protein 19
3swm_C6e-431317019173NAC domain-containing protein 19
3swm_D6e-431317019173NAC domain-containing protein 19
3swp_A6e-431317019173NAC domain-containing protein 19
3swp_B6e-431317019173NAC domain-containing protein 19
3swp_C6e-431317019173NAC domain-containing protein 19
3swp_D6e-431317019173NAC domain-containing protein 19
4dul_A6e-431317016170NAC domain-containing protein 19
4dul_B6e-431317016170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G001100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964251.10.0uncharacterized protein LOC101755267 isoform X2
TrEMBLA0A368QP710.0A0A368QP71_SETIT; Uncharacterized protein
STRINGSi006105m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.14e-63NAC transcription factor-like 9