PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G421000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 258aa    MW: 27859.2 Da    PI: 8.0415
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G421000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.7e-151464148
                        TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W++eEd +l  +++q+Gg     W + +r+ g++R++k+c++rw++yl
  Sevir.3G421000.1.p 14 RGPWSEEEDARLRSYIEQHGGAvagGWMALPRKAGLRRCGKSCRLRWLNYL 64
                        89******************99***************************97 PP
2Myb_DNA-binding40.37.6e-1371113246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g +++eEd  +  + +  G++ W++Ia++++ gRt++ +k++w++
  Sevir.3G421000.1.p  71 GGFSPEEDRAICALYAAVGSR-WSLIAAYLP-GRTDNAVKNYWNT 113
                         569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.523964IPR017930Myb domain
SuperFamilySSF466892.11E-2512111IPR009057Homeodomain-like
SMARTSM007175.8E-101366IPR001005SANT/Myb domain
PfamPF002495.5E-131464IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-201571IPR009057Homeodomain-like
CDDcd001671.19E-71664No hitNo description
PROSITE profilePS5129422.1365119IPR017930Myb domain
SMARTSM007173.3E-1269117IPR001005SANT/Myb domain
PfamPF002491.8E-1171113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2372119IPR009057Homeodomain-like
CDDcd001677.01E-1073115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGRSPCCDKA AVKRGPWSEE EDARLRSYIE QHGGAVAGGW MALPRKAGLR RCGKSCRLRW  60
LNYLRPGVRH GGFSPEEDRA ICALYAAVGS RWSLIAAYLP GRTDNAVKNY WNTRLKKKLL  120
SVSFEGEPCN AVGRNAAPPV ASPMAPWTAL PYTCYGGGGG VDQMRVVGAG GGTTDNVIAS  180
TNSAAVVSQP ADASYSSEPM AAATELDEIF RSMGTTGGEH SDLSQSSTET ETSWYQYRQH  240
AGESVLQQHL EMPYLYW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24141197108B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G421000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964229.20.0transcription factor RAX1
TrEMBLA0A368QNY50.0A0A368QNY5_SETIT; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-65myb domain protein 84