PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G394000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 165aa MW: 17708.8 Da PI: 11.2797 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.8 | 2.6e-05 | 48 | 74 | 24 | 55 |
HCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 24 rellPkaskapskKlsKaeiLekAveYIksLq 55 ++l+P + K + a++L ++++YIksL+ Sevir.3G394000.1.p 48 KQLVPGC-----DKCNQASTLDQTIQYIKSLK 74 5667766.....89****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 6.5E-7 | 48 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.32E-7 | 48 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.56E-4 | 48 | 78 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MDKKEKQQLP MAEQGIGTKQ QETRKTPGGG SPKRSHSHHG EARSLTGKQL VPGCDKCNQA 60 STLDQTIQYI KSLKHQVQAM CVGPARPAAA YPVVQPQHAP RGAAVAVPIM PAAPVVLAAA 120 PTMVPFRAMI QLPHYPAAAV PVMMPAAAAP PLIQWPQRRR RRLR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G394000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012699853.1 | 4e-42 | transcription factor APG isoform X1 | ||||
Refseq | XP_012699854.1 | 3e-42 | transcription factor APG isoform X2 | ||||
TrEMBL | K3ZDG5 | 1e-68 | K3ZDG5_SETIT; Uncharacterized protein | ||||
STRING | Si024601m | 2e-69 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6283 | 24 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 3e-08 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G394000.1.p |