PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G386100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 444aa MW: 47203.9 Da PI: 4.317 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.3e-19 | 100 | 149 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g Sevir.3G386100.1.p 100 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 149 789******.7*********33....35**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.53E-31 | 99 | 156 | No hit | No description |
PROSITE profile | PS51032 | 19.599 | 100 | 157 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-27 | 100 | 156 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-13 | 100 | 149 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.3E-36 | 100 | 163 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-19 | 100 | 157 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.9E-8 | 101 | 112 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-8 | 123 | 139 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MNNQRKQQRD LIFSCLHCLL SSPINSTDLA RHRSISPLLT PSLARSTASM ARKRKASDSV 60 EFEDGNDVLI NSPPPLPSTD AWASVAAAAA AAQQQRGRKR FVGVRQRPSG RWVAEIKDTI 120 QKIRVWLGTF DTAEEAARAY DEAACLLRGS NTRTNFWPRP TPAAAAAHPV QVQVQVEPPL 180 AVASSSPAPA LPSKVTNLLL LRLRARNQQL FSAATAAQHE AALLPGPLCA DEPYGGGGGE 240 ECAFHVDDFL SYDSGSSDGN SSQEMEDEEE EEEEEELDFQ FMDEHAAGCE GGLCSPFDVV 300 AAELGGAVGA ADGGEPESES AVQELMRRRM DYERKISASL YALSGVSECL RMRHGAGVGD 360 QLTGLREACR KKQRDAAQQQ QQEEEAPSPE AAEDGNAAQE ECSGGSGAPE AASSSSSSEA 420 SDGDGDGDGD ELLWSSLDLA PIC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-12 | 100 | 156 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G386100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012620 | 3e-93 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004964146.1 | 0.0 | uncharacterized protein LOC101780522 | ||||
TrEMBL | A0A368QMN8 | 0.0 | A0A368QMN8_SETIT; Uncharacterized protein | ||||
STRING | Si024417m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5482 | 30 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 8e-22 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G386100.1.p |