PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G371400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 293aa    MW: 30587.8 Da    PI: 6.1786
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G371400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-1896146155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr++k +g Wv+eIr+p+    +  r++lg+f tae+Aa+a++ a+++ +g
  Sevir.3G371400.1.p  96 PSYRGVRRRK-WGVWVSEIREPR----KaSRIWLGTFPTAEMAARAHDVAALAVRG 146
                         57*****998.**********94....36**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-1396146IPR001471AP2/ERF domain
CDDcd000181.46E-2696154No hitNo description
PROSITE profilePS5103223.77597154IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2097155IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-3197155IPR001471AP2/ERF domain
SMARTSM003806.7E-3497160IPR001471AP2/ERF domain
PRINTSPR003676.9E-1098109IPR001471AP2/ERF domain
PRINTSPR003676.9E-10120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDADGLHATT TMSSSSSITS TQRQSKKKPK PKHVKSHKAA AAAAGDHCQA REREATDGAM  60
MCAEDEERNS GGASSGEHAA SASCRSRKRG AAGRHPSYRG VRRRKWGVWV SEIREPRKAS  120
RIWLGTFPTA EMAARAHDVA ALAVRGRAAR LNFPQLAHQL PRPASASPAD IQAAAAMAAV  180
AGGVDAAALV GECEDDVVSP SAAETSSPPS SSSSSSCAAA GPPAGSRDDD DNAMTAALFD  240
LPDDLLLDLR DGLWSSEYFW AAAPVAAGLE YHDGEEDVHG LYSEPLLWAA DQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1989155673Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
186104RKRGAAGRHPSYRGVRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G371400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3076623e-64AJ307662.1 Oryza sativa genomic DNA fragment, chromosome 2.
GenBankAP0050063e-64AP005006.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0519E06.
GenBankAP0149583e-64AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAY3452323e-64AY345232.1 Oryza sativa transcription factor Rap212 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964110.10.0ethylene-responsive transcription factor ERF039
TrEMBLA0A368QM720.0A0A368QM72_SETIT; Uncharacterized protein
STRINGSi024861m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5875022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-13ERF family protein