PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G371300.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 243aa    MW: 26331.4 Da    PI: 5.4278
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G371300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.3e-11114158348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +WT++E+ l++ +   + g+ W++ +r+  + Rt+ q+ s++qky+
  Sevir.3G371300.2.p 114 KWTEDEHRLFLAGLPFYRGN-WNAMSREYLTSRTASQIASHYQKYR 158
                         8*****************99.************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.632107162IPR017930Myb domain
SuperFamilySSF466892.54E-11109162IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-11110160IPR006447Myb domain, plants
SMARTSM007177.3E-7111160IPR001005SANT/Myb domain
CDDcd001679.80E-5114157No hitNo description
PfamPF002495.4E-8114158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-7114159IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MHHDGYAAAA AAPPPALAAS PEPEQEPKWT RRDDKFLELL LFTRNTVSLR VASGIIVLTP  60
PVWDMEIAAM AVAAEEVVPE AVVPAAPPVA ARKNSAERAV GAGGGKRNKK AAEKWTEDEH  120
RLFLAGLPFY RGNWNAMSRE YLTSRTASQI ASHYQKYRNR EKQREHDNCK RASIHDITEP  180
GIAAAFAVSG GKAAAWKGEL PRSEGSARGQ ENEPWEPIES GEDGLSPVEE FPGEDDPGTL  240
LT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G371300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680627.11e-140LRR receptor-like serine/threonine-protein kinase EFR isoform X2
TrEMBLA0A368QMN61e-139A0A368QMN6_SETIT; Uncharacterized protein
STRINGSi039462m1e-130(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-15MYB family protein