PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G371300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 269aa MW: 29286.8 Da PI: 5.6462 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.4 | 5e-11 | 140 | 184 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT++E+ l++ + + g+ W++ +r+ + Rt+ q+ s++qky+ Sevir.3G371300.1.p 140 KWTEDEHRLFLAGLPFYRGN-WNAMSREYLTSRTASQIASHYQKYR 184 8*****************99.************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 37 | 25 | 73 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 10.632 | 133 | 188 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.07E-11 | 135 | 188 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.1E-11 | 136 | 186 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.3E-7 | 137 | 186 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.96E-5 | 140 | 183 | No hit | No description |
Pfam | PF00249 | 6.3E-8 | 140 | 184 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-7 | 140 | 185 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MHHDGYAAAA AAPPPALAAS PEPEQEPKWT RRDDKFLELL LFTRNTVSLR VASGIIGKTP 60 AQIHQRCTFM FAELSHVLES LEVLTPPVWD MEIAAMAVAA EEVVPEAVVP AAPPVAARKN 120 SAERAVGAGG GKRNKKAAEK WTEDEHRLFL AGLPFYRGNW NAMSREYLTS RTASQIASHY 180 QKYRNREKQR EHDNCKRASI HDITEPGIAA AFAVSGGKAA AWKGELPRSE GSARGQENEP 240 WEPIESGEDG LSPVEEFPGE DDPGTLLT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G371300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022680626.1 | 1e-161 | LRR receptor-like serine/threonine-protein kinase EFR isoform X1 | ||||
TrEMBL | K4AKN9 | 1e-156 | K4AKN9_SETIT; Uncharacterized protein | ||||
STRING | Si039462m | 1e-156 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14418 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-15 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G371300.1.p |