PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G353500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YC
Protein Properties Length: 468aa    MW: 50982.3 Da    PI: 5.0094
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G353500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC827.2e-2625121497
               NF-YC   4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                          fw k+   ie  +df n+++P++rikk++  ++   m++ ++P +l+kace+f+ e+++rsw+ a++++r+ +  sdi++a+++t+ +df
  Sevir.3G353500.1.p  25 DFWRKRqveIEAIQDFGNRAIPMTRIKKVICDEKGKMMMTFDTPSFLTKACEIFVQEIAFRSWMCANSSQRSIILDSDITEAIASTQSYDF 115
                         69988767799********************999999****************************************************** PP

               NF-YC  92 lvdivp 97 
                         l d   
  Sevir.3G353500.1.p 116 LNDFLN 121
                         **9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.38E-1530127IPR009072Histone-fold
PfamPF008081.2E-745107IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.105.9E-1746120IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MDHRIEIRSS PRTPMPLSQQ EMIDDFWRKR QVEIEAIQDF GNRAIPMTRI KKVICDEKGK  60
MMMTFDTPSF LTKACEIFVQ EIAFRSWMCA NSSQRSIILD SDITEAIAST QSYDFLNDFL  120
NAHQDEHRSY PYPKPTKKRH RLLTNLPSSS CHLPPHQNQL PQFSHQFTRY PPSVHIPPLV  180
VPQTNGPRVP LPLASLPYEA SSVIATTGTP APVVSGIIPP TNYMGNGLGS FGNTIKKIAA  240
SSGVMNHLKE LPRALANIPN TYCYMNMVAS ASVYGVDSAS SSNVAAQDSG MAFHCPYIPQ  300
ITLQLPSPLQ TTITSAHTTT NITIENYIDV GVAATKSTIH ASSTTNGNGD IDPNAIGVGD  360
DQHQHEEEAN TSLEVNGVHG SLDAQAVAAA SIGNDINWDE FDMLDDSLLS VVGKDIVMDE  420
EPAPLPNTAS NDDLLLASNM SNLEGFSHEP YLLDDIISSA GTSKRCT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G353500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368QLM60.0A0A368QLM6_SETIT; Uncharacterized protein
STRINGSi022020m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91742145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.21e-19nuclear factor Y, subunit C4