PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G345000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 241aa MW: 27290.9 Da PI: 8.1133 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.1 | 8.8e-18 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lv+ v+++G ++W+ Ia+ g++Rt+k+c++rw +yl Sevir.3G345000.1.p 10 KGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYL 57 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.5 | 5.5e-17 | 63 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+++ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++ Sevir.3G345000.1.p 63 RGRMSPNEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 108 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.259 | 5 | 57 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-15 | 9 | 59 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.87E-29 | 9 | 104 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-16 | 10 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-19 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.88E-12 | 12 | 57 | No hit | No description |
PROSITE profile | PS51294 | 25.614 | 58 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-15 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-15 | 63 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 65 | 111 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.41E-11 | 65 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MVTVREETRK GPWTEQEDLQ LVCTVRLFGE RRWDFIAKVS GLNRTGKSCR LRWVNYLHPG 60 LKRGRMSPNE ERLILELHAR WGNRWSRIAR RLPGRTDNEI KNYWRTHMRK KAQERKRNMS 120 PSSSSSSLTY QSCYPDTPST VGVEGQELHG GSGCITSIMK GTPQDMDVYP MDQIWMEIEA 180 PDVPSSMGLD GGNENACSSL AAPLVPPAAW DYYPEAGWKM DDEIKMAPQF GYGEGVGPCF 240 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-27 | 7 | 112 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-27 | 10 | 112 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-27 | 10 | 112 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G345000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039131 | 0.0 | BT039131.1 Zea mays full-length cDNA clone ZM_BFb0374B19 mRNA, complete cds. | |||
GenBank | HQ858675 | 0.0 | HQ858675.1 Zea mays clone UT1131 MYB transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004962720.1 | 1e-179 | myb-related protein MYBAS2 | ||||
Swissprot | Q4JL76 | 1e-133 | MYBA2_ORYSJ; Myb-related protein MYBAS2 | ||||
TrEMBL | K3Z983 | 1e-178 | K3Z983_SETIT; Uncharacterized protein | ||||
STRING | Si023104m | 1e-179 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 2e-71 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G345000.1.p |
Publications ? help Back to Top | |||
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