PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.3G341100.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

GRAS

Protein Properties

Length: 732aa MW: 80562.9 Da PI: 5.1887

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.3G341100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	368.7	7.8e-113	350	721	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lL++cA+av+s+d ++a++lL++++++asp+gd++qRla++f+e+L+arla+++s +y++l +++ts ++ l+a++l+ + + Sevir.3G341100.1.p 350 LRTLLIHCAQAVASDDRRNATELLKQIKQHASPQGDATQRLAHCFAEGLQARLAGTGSMVYQSLMAKRTS---AVDILQAYQLYMAAICFK 437 6789**********************************************************999998...9************* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 k+ ++ Nq+I++a g++++Hi+D++i +G+QWp++l+ +a+R++gpp++RiTg++ p++g ++++eetg+rL+k+A+e+gvpf+++v Sevir.3G341100.1.p 438 KVVFIFSNQTIYNASLGKKKIHIVDYGIHYGFQWPCFLRRIACREGGPPEVRITGIDLPQPGfrPTQRIEETGRRLSKYAQEFGVPFKYQV 528 *********************************************************9************************* PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 ++a+++e+++ e+L+++p+E+l+Vn+ +q ++l+desv +es+rd vL+ +++++P+ ++++ + + +++ F++rf eal yysalfd l Sevir.3G341100.1.p 529 IAASKMETIRAEDLNLDPEEVLIVNCLYQFKNLMDESVLIESPRDIVLNNIRKMRPHAFIHAIVNGSFSAPFFVTRFREALFYYSALFDVL 619 *************************************************************************************** PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 +++ pr+s++r+ +E+ ++gr++ nv+aceg++r+er et+++W+ r ++aG+k++pl+ ++++ ++ + ++ + + ++ ++++l++gW Sevir.3G341100.1.p 620 DTTTPRDSNQRMLIEQNIFGRAALNVIACEGTDRVERPETYKQWQVRNQRAGLKQLPLNPDVVQVVRDKVDGCYHKDFVIDIDHNWLLQGW 710 **********************************************************************889********** PP GRAS 363 kdrpLvsvSaW 373 k+r L+++S W Sevir.3G341100.1.p 711 KGRILYAISTW 721 ********* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.321	324	702	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.7E-110	350	721	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence Send to blast
MGSSYDPSPS PGAIADDLSF YLSDLGPTSP SAYLDLPPTP HHEQPQPQPQ PQPSYPQPNG 60 GAGAAASPED MVLPFISRML MEEDIDDKFF YEYPDHPALL QAQQPFLDIL SDDTSTSPSA 120 THSGASVSHP ASSCSSDAAN APLTPAAVDS YASAPGAQFN GFDLDPAAFF SDGANSDLMS 180 SAFLKGMEEA NKFLPSQDKL VIDLDPPEDA KRFVLPTENK FAAAGFNGSA PVAAAVAVKE 240 EVVAVAALDA VPGGGGGVGG RGRKNRFYDD EEDLEMDRRS SKQSALQGDG DDRDVFDKYM 300 ITSHEMCVEQ MEKLRIAMQE EAAKKEAVNG NGKAKAKGGG RRGGREVVDL RTLLIHCAQA 360 VASDDRRNAT ELLKQIKQHA SPQGDATQRL AHCFAEGLQA RLAGTGSMVY QSLMAKRTSA 420 VDILQAYQLY MAAICFKKVV FIFSNQTIYN ASLGKKKIHI VDYGIHYGFQ WPCFLRRIAC 480 REGGPPEVRI TGIDLPQPGF RPTQRIEETG RRLSKYAQEF GVPFKYQVIA ASKMETIRAE 540 DLNLDPEEVL IVNCLYQFKN LMDESVLIES PRDIVLNNIR KMRPHAFIHA IVNGSFSAPF 600 FVTRFREALF YYSALFDVLD TTTPRDSNQR MLIEQNIFGR AALNVIACEG TDRVERPETY 660 KQWQVRNQRA GLKQLPLNPD VVQVVRDKVD GCYHKDFVID IDHNWLLQGW KGRILYAIST 720 WVANDDAGSY F*

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence Send to blast

MGSSYDPSPS PGAIADDLSF YLSDLGPTSP SAYLDLPPTP HHEQPQPQPQ PQPSYPQPNG  60
GAGAAASPED MVLPFISRML MEEDIDDKFF YEYPDHPALL QAQQPFLDIL SDDTSTSPSA  120
THSGASVSHP ASSCSSDAAN APLTPAAVDS YASAPGAQFN GFDLDPAAFF SDGANSDLMS  180
SAFLKGMEEA NKFLPSQDKL VIDLDPPEDA KRFVLPTENK FAAAGFNGSA PVAAAVAVKE  240
EVVAVAALDA VPGGGGGVGG RGRKNRFYDD EEDLEMDRRS SKQSALQGDG DDRDVFDKYM  300
ITSHEMCVEQ MEKLRIAMQE EAAKKEAVNG NGKAKAKGGG RRGGREVVDL RTLLIHCAQA  360
VASDDRRNAT ELLKQIKQHA SPQGDATQRL AHCFAEGLQA RLAGTGSMVY QSLMAKRTSA  420
VDILQAYQLY MAAICFKKVV FIFSNQTIYN ASLGKKKIHI VDYGIHYGFQ WPCFLRRIAC  480
REGGPPEVRI TGIDLPQPGF RPTQRIEETG RRLSKYAQEF GVPFKYQVIA ASKMETIRAE  540
DLNLDPEEVL IVNCLYQFKN LMDESVLIES PRDIVLNNIR KMRPHAFIHA IVNGSFSAPF  600
FVTRFREALF YYSALFDVLD TTTPRDSNQR MLIEQNIFGR AALNVIACEG TDRVERPETY  660
KQWQVRNQRA GLKQLPLNPD VVQVVRDKVD GCYHKDFVID IDHNWLLQGW KGRILYAIST  720
WVANDDAGSY F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-42	356	722	24	378	Protein SCARECROW
5b3h_D	2e-42	356	722	24	378	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.3G341100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025807224.1	0.0	scarecrow-like protein 34
TrEMBL	A0A3L6SY94	0.0	A0A3L6SY94_PANMI; Uncharacterized protein
STRING	GRMZM2G159475_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-157	GRAS family protein

Link Out ? help Back to Top
Phytozome	Sevir.3G341100.1.p