PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G338400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | Dof | ||||||||
Protein Properties | Length: 338aa MW: 34150.2 Da PI: 8.8753 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.9 | 4.7e-38 | 106 | 163 | 5 | 62 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +l+cprCdstntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+n k+s Sevir.3G338400.1.p 106 TLRCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNTKRS 163 679***************************************************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 9.0E-32 | 88 | 159 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.385 | 107 | 161 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.2E-31 | 107 | 161 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 109 | 145 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MVFSSLPIFL DPPNWGQMQM QQQQPPLQCL LGGGGGGSDH HHLMPPPSGL APLPGGPADT 60 AASAPAGGGS STSMQAAAGA AAQPRPVVSM AERARLARVP LPEPGTLRCP RCDSTNTKFC 120 YFNNYSLSQP RHFCKACRRY WTRGGALRNV PVGGGCRRNT KRSSKKSSRG GGAGATAATS 180 SSSTTSTSTT ATTTTATTSA AMAAAEAIAS MQAQLPHLGL PPAAAAAALE ASLEGYHHYL 240 PLQLQPQFLQ QAGLHGYHFA DDGSGVLADG FPRGVVASGL LAQLAAVKME EHGGGGGGGG 300 AVAAHEQPYW AGSNGGGSGW PAEFLSGFSS SSSGNVL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00281 | DAP | Transfer from AT2G28810 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G338400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC582419 | 0.0 | KC582419.1 Sorghum bicolor dof28 protein (dof28) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004962704.1 | 0.0 | dof zinc finger protein DOF2.4 | ||||
TrEMBL | A0A368QNB5 | 0.0 | A0A368QNB5_SETIT; Uncharacterized protein | ||||
STRING | Si022683m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02460.1 | 2e-39 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G338400.1.p |