PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G311700.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 545aa    MW: 58968 Da    PI: 7.211
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G311700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH345.1e-11108133126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ++++ C +++++GtC++G +CkF+H+
  Sevir.3G311700.3.p 108 PGEPDCTYYLKFGTCRFGIKCKFNHP 133
                         5789*********************8 PP
2zf-CCCH25.71.9e-08256278325
                         S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                         +e+C++++  G Ck+G  Ck+ H
  Sevir.3G311700.3.p 256 QEECKYYSTPGGCKFGKACKYLH 278
                         699******************** PP
3zf-CCCH33.28.6e-11303327226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++++C+f++rtG Ck+  +CkF+H+
  Sevir.3G311700.3.p 303 GEKECPFYMRTGSCKFATNCKFHHP 327
                         7899********************9 PP
4zf-CCCH22.51.9e-07447473127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C++f ++G+Cky  +C+F+H++
  Sevir.3G311700.3.p 447 PGQPECQHFVKSGFCKYRMKCRFHHPR 473
                         5789*********************96 PP
5zf-CCCH24.54.6e-08493518227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         +++ C ++ r+G CkyG+ C F+H++
  Sevir.3G311700.3.p 493 DQPVCTYYGRFGVCKYGPACMFNHPF 518
                         6899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.8E-5107134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.981107135IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-8109133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-5112135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.84253281IPR000571Zinc finger, CCCH-type
SMARTSM003560.004253280IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-5257281IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-6257278IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4259280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.896301329IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5301328IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7303327IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5304328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001307326IPR000571Zinc finger, CCCH-type
SMARTSM003560.012446473IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.657446474IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-5450474IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.967491519IPR000571Zinc finger, CCCH-type
SMARTSM003560.0057491518IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5492519IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-5493518IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MADADANPPP PDAAASPIAS ISPSTVGAGD ATDADADSIV KQLAGLGIAA AGGEVFPEPS  60
GWDDVPVPVP VAVADGDEVA GEKVRGPPAP AAAGAGAADA KVRFPRRPGE PDCTYYLKFG  120
TCRFGIKCKF NHPSRKKKGS RARGSGSSGS GSNSSSNKAS SPDDDQAPRE EYEGLVPDIS  180
DSVSFDDKGS SSNSENHRKN SYEVIDMKKG KMEPKEKISE EPEKGIYFKK LDETNNTSQK  240
GAKDKRRETF SEGSAQEECK YYSTPGGCKF GKACKYLHRE GKEGKAEVEK VELNFLGLPL  300
RPGEKECPFY MRTGSCKFAT NCKFHHPDPT NVPSKEPVLE HENGDTPQQN VQGPSQPSVP  360
IWPEQRALNE QHVPFLAPAP SYNGGMIPPQ GMYPSPDWNG YHQVPVNPYY PPPFPHFPAP  420
HMNHPMYKAV DIPGHQQLPS DEYPERPGQP ECQHFVKSGF CKYRMKCRFH HPRARQPAPL  480
TGLSPIGLPI KPDQPVCTYY GRFGVCKYGP ACMFNHPFNF GPPVPAAGPP LPGQYHPTPG  540
NFTV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G311700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963965.20.0zinc finger CCCH domain-containing protein 65 isoform X2
SwissprotQ2QTY20.0C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLK3Z5640.0K3Z564_SETIT; Uncharacterized protein
STRINGSi021682m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.12e-56C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]