PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G311700.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 523aa    MW: 57032.3 Da    PI: 7.5086
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G311700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH344.9e-11108133126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ++++ C +++++GtC++G +CkF+H+
  Sevir.3G311700.2.p 108 PGEPDCTYYLKFGTCRFGIKCKFNHP 133
                         5789*********************8 PP
2zf-CCCH25.81.8e-08234256325
                         S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                         +e+C++++  G Ck+G  Ck+ H
  Sevir.3G311700.2.p 234 QEECKYYSTPGGCKFGKACKYLH 256
                         699******************** PP
3zf-CCCH33.38.2e-11281305226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++++C+f++rtG Ck+  +CkF+H+
  Sevir.3G311700.2.p 281 GEKECPFYMRTGSCKFATNCKFHHP 305
                         7899********************9 PP
4zf-CCCH22.61.8e-07425451127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C++f ++G+Cky  +C+F+H++
  Sevir.3G311700.2.p 425 PGQPECQHFVKSGFCKYRMKCRFHHPR 451
                         5789*********************96 PP
5zf-CCCH24.64.4e-08471496227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         +++ C ++ r+G CkyG+ C F+H++
  Sevir.3G311700.2.p 471 DQPVCTYYGRFGVCKYGPACMFNHPF 496
                         6899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.8E-5107134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.981107135IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-8109133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-5112135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.84231259IPR000571Zinc finger, CCCH-type
SMARTSM003560.004231258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-5235259IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-6235256IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4237258IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5279306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.896279307IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-7281305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5282306IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-4285304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.657424452IPR000571Zinc finger, CCCH-type
SMARTSM003560.012424451IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-5428452IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.967469497IPR000571Zinc finger, CCCH-type
SMARTSM003560.0057469496IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5470497IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-5471496IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MADADANPPP PDAAASPIAS ISPSTVGAGD ATDADADSIV KQLAGLGIAA AGGEVFPEPS  60
GWDDVPVPVP VAVADGDEVA GEKVRGPPAP AAAGAGAADA KVRFPRRPGE PDCTYYLKFG  120
TCRFGIKCKF NHPSRKKKGS RAPREEYEGL VPDISDSVSF DDKGSSSNSE NHRKNSYEVI  180
DMKKGKMEPK EKISEEPEKG IYFKKLDETN NTSQKFLKGA KDKRRETFSE GSAQEECKYY  240
STPGGCKFGK ACKYLHREGK EGKAEVEKVE LNFLGLPLRP GEKECPFYMR TGSCKFATNC  300
KFHHPDPTNV PSKEPVLEHE NGDTPQQNVQ GPSQPSVPIW PEQRALNEQH VPFLAPAPSY  360
NGGMIPPQGM YPSPDWNGYH QVPVNPYYPP PFPHFPAPHM NHPMYKAVDI PGHQQLPSDE  420
YPERPGQPEC QHFVKSGFCK YRMKCRFHHP RARQPAPLTG LSPIGLPIKP DQPVCTYYGR  480
FGVCKYGPAC MFNHPFNFGP PVPAAGPPLP GQYHPTPGNF TV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G311700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807655.10.0zinc finger CCCH domain-containing protein 65-like isoform X1
SwissprotQ2QTY20.0C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A2T7EFS50.0A0A2T7EFS5_9POAL; Uncharacterized protein
STRINGPavir.Cb01040.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.12e-57C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]