PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G311700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 548aa    MW: 59356.5 Da    PI: 7.3555
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G311700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.95.2e-11108133126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ++++ C +++++GtC++G +CkF+H+
  Sevir.3G311700.1.p 108 PGEPDCTYYLKFGTCRFGIKCKFNHP 133
                         5789*********************8 PP
2zf-CCCH25.71.9e-08259281325
                         S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                         +e+C++++  G Ck+G  Ck+ H
  Sevir.3G311700.1.p 259 QEECKYYSTPGGCKFGKACKYLH 281
                         699******************** PP
3zf-CCCH33.28.7e-11306330226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++++C+f++rtG Ck+  +CkF+H+
  Sevir.3G311700.1.p 306 GEKECPFYMRTGSCKFATNCKFHHP 330
                         7899********************9 PP
4zf-CCCH22.52e-07450476127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C++f ++G+Cky  +C+F+H++
  Sevir.3G311700.1.p 450 PGQPECQHFVKSGFCKYRMKCRFHHPR 476
                         5789*********************96 PP
5zf-CCCH24.54.6e-08496521227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         +++ C ++ r+G CkyG+ C F+H++
  Sevir.3G311700.1.p 496 DQPVCTYYGRFGVCKYGPACMFNHPF 521
                         6899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.8E-5107134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.981107135IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-8109133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-5112135IPR000571Zinc finger, CCCH-type
SMARTSM003560.004256283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.84256284IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-6260281IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-5260284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4262283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.896304332IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5304331IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7306330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5307331IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001310329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.657449477IPR000571Zinc finger, CCCH-type
SMARTSM003560.012449476IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-5453477IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.967494522IPR000571Zinc finger, CCCH-type
SMARTSM003560.0057494521IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5495522IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-5496521IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MADADANPPP PDAAASPIAS ISPSTVGAGD ATDADADSIV KQLAGLGIAA AGGEVFPEPS  60
GWDDVPVPVP VAVADGDEVA GEKVRGPPAP AAAGAGAADA KVRFPRRPGE PDCTYYLKFG  120
TCRFGIKCKF NHPSRKKKGS RARGSGSSGS GSNSSSNKAS SPDDDQAPRE EYEGLVPDIS  180
DSVSFDDKGS SSNSENHRKN SYEVIDMKKG KMEPKEKISE EPEKGIYFKK LDETNNTSQK  240
FLKGAKDKRR ETFSEGSAQE ECKYYSTPGG CKFGKACKYL HREGKEGKAE VEKVELNFLG  300
LPLRPGEKEC PFYMRTGSCK FATNCKFHHP DPTNVPSKEP VLEHENGDTP QQNVQGPSQP  360
SVPIWPEQRA LNEQHVPFLA PAPSYNGGMI PPQGMYPSPD WNGYHQVPVN PYYPPPFPHF  420
PAPHMNHPMY KAVDIPGHQQ LPSDEYPERP GQPECQHFVK SGFCKYRMKC RFHHPRARQP  480
APLTGLSPIG LPIKPDQPVC TYYGRFGVCK YGPACMFNHP FNFGPPVPAA GPPLPGQYHP  540
TPGNFTV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G311700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700468.10.0zinc finger CCCH domain-containing protein 65 isoform X1
SwissprotQ2QTY20.0C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A368QKM80.0A0A368QKM8_SETIT; Uncharacterized protein
STRINGPavir.Cb01040.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.15e-57C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]