PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G302100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 313aa    MW: 34463.9 Da    PI: 6.9482
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G302100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-056486123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ Cg+ F++   L  H+++H
  Sevir.3G302100.1.p 64 YTCSFCGREFRSAQALGGHMNVH 86
                        9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.01E-76190No hitNo description
Gene3DG3DSA:3.30.160.601.9E-46288IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00136486IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-66487IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.2176491IPR007087Zinc finger, C2H2
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MMDPTRYWML NSLSDQKEPL FTTTIAVGRG SSSSASYYES WEERAFAEDS AGPLGGCIWP  60
PRSYTCSFCG REFRSAQALG GHMNVHRRDR ARLKLAGVAE DGGTDNQIVS DHQSYLIQPC  120
PPQIAALQQA YGVKPSAPST ETNPNLICSV LPRPSRSYVP VAAKRTVWGK QVLSSPLTSL  180
QAYSNGYGKK QVILDAPRLS QDHPKPAERM CSNTELHGER CELKLSVLGC RTRKDFDASD  240
DDEIFQVTCK RRKIDLVASP LVLCSSPGKF QEDDNYDGDD KPSCAKVLKL CPSSPDEELD  300
LELRLGEVPK TK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-125986229superman protein
2l1o_A1e-125986229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G302100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963902.20.0uncharacterized protein LOC101766620
TrEMBLA0A368QK760.0A0A368QK76_SETIT; Uncharacterized protein
STRINGSi024070m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95942840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.15e-23C2H2 family protein