PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G297400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 302aa MW: 31901.9 Da PI: 8.9723 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.9 | 2.5e-18 | 102 | 151 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +g+++AeIrdp + rkr +lg+f+t+eeAa+ ++ a+++l+g Sevir.3G297400.1.p 102 RFRGVRVRP-WGKYAAEIRDPAQ---RKRLWLGTFDTPEEAAAVYDDAALRLKG 151 69*******.**********943...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.5E-28 | 102 | 159 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.458 | 102 | 159 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-20 | 102 | 159 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.2E-11 | 102 | 151 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 102 | 165 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.0E-9 | 103 | 114 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.14E-22 | 110 | 159 | No hit | No description |
PRINTS | PR00367 | 9.0E-9 | 125 | 141 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MSSADSLASG RSRRAGPPPP RPKRVRVYFV DADATDTDSS GDEDERAKRR VREIINIDVE 60 AAASARAAQA AQALMAPKKR PLYSSPAAAA LARLRAAGGF RRFRGVRVRP WGKYAAEIRD 120 PAQRKRLWLG TFDTPEEAAA VYDDAALRLK GSHAVVNFPS PPAAPSRRMK LRPRREIPRR 180 HAAASDSEAT DDDGDALASP LAPTPSPTPL ELEPQAAAAP LCPFASPTSV LRYGADEVPA 240 APALPAFDFI YGELGEIGAA AAPSSKAAAA EFDWLPWWEG EDFVTATGLT PSAGAAAVSV 300 V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-19 | 101 | 159 | 4 | 63 | ATERF1 |
3gcc_A | 2e-19 | 101 | 159 | 4 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G297400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004962466.1 | 0.0 | ethylene-responsive transcription factor CRF3 | ||||
TrEMBL | K3Z8B8 | 0.0 | K3Z8B8_SETIT; Uncharacterized protein | ||||
STRING | Si022788m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13140 | 22 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11140.1 | 9e-20 | cytokinin response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G297400.1.p |