PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G288700.6.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 334aa    MW: 36436.4 Da    PI: 5.16
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G288700.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62.1e-2083134156
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                         +gy+GVr++  +g+WvAeIr+p   + r  r +lg+f tae+Aa+a+++a+++++ge
  Sevir.3G288700.6.p  83 CGYRGVRQRT-WGKWVAEIREP---N-RaNRLWLGTFPTAEDAARAYDQAARAMYGE 134
                         79*****999.**********8...3.469************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-1483134IPR001471AP2/ERF domain
CDDcd000187.12E-3083141No hitNo description
PROSITE profilePS5103222.89384141IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-2284142IPR016177DNA-binding domain
SMARTSM003805.0E-3384147IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-3285142IPR001471AP2/ERF domain
PRINTSPR003671.2E-108596IPR001471AP2/ERF domain
PRINTSPR003671.2E-10107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MTVDQKQAMP MQVQAMQPGS RKKRPRRLRD GPTSVAAVIQ RWAEHNKQLE HDSEGAKRPR  60
KAPAKGSKKG CMKGKGGPEN THCGYRGVRQ RTWGKWVAEI REPNRANRLW LGTFPTAEDA  120
ARAYDQAARA MYGEVARTNF PRQNAVASSQ VAWAATPAQV APSVVEGVVH STSCESTTTS  180
NHSDIASTLH KPEVSDLSSS VKVECPEVVE AGSRRSEMVS GTSHQHEDSH PSTQASTPNV  240
GDKEVFEPLE PIANLPEGDF DGFDIDEMLR MMEADPQNEG GAGAGMEQPF YFDGLDSSLL  300
ESMLQSEPEP YSLSEEQDMF LAGFESPGFF EGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-17821481279Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G288700.6.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2276970.0DQ227697.1 Pennisetum glaucum transcription factor DREB2A gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681189.10.0dehydration-responsive element-binding protein 2B isoform X1
SwissprotQ5W6R41e-90DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B
TrEMBLK3Z7U90.0K3Z7U9_SETIT; Uncharacterized protein
STRINGSi022619m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.17e-37DRE-binding protein 2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]