PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G288700.4.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 263aa    MW: 28478.2 Da    PI: 4.2531
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G288700.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-201263156
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                        +gy+GVr++  +g+WvAeIr+p   + r  r +lg+f tae+Aa+a+++a+++++ge
  Sevir.3G288700.4.p 12 CGYRGVRQRT-WGKWVAEIREP---N-RaNRLWLGTFPTAEDAARAYDQAARAMYGE 63
                        79*****999.**********8...3.469************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-141263IPR001471AP2/ERF domain
CDDcd000185.72E-311270No hitNo description
PROSITE profilePS5103222.8931370IPR001471AP2/ERF domain
SMARTSM003805.0E-331376IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-221371IPR016177DNA-binding domain
PRINTSPR003678.0E-111425IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-321471IPR001471AP2/ERF domain
PRINTSPR003678.0E-113652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MKGKGGPENT HCGYRGVRQR TWGKWVAEIR EPNRANRLWL GTFPTAEDAA RAYDQAARAM  60
YGEVARTNFP RQNAVASSQV AWAATPAQVA PSVVEGVVHS TSCESTTTSN HSDIASTLHK  120
PEVSDLSSSV KVECPEVVEA GSRRSEMVSG TSHQHEDSHP STQASTPNVG DKEVFEPLEP  180
IANLPEGDFD GFDIDEMLRM MEADPQNEGG AGAGMEQPFY FDGLDSSLLE SMLQSEPEPY  240
SLSEEQDMFL AGFESPGFFE GL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1811771279Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G288700.4.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8294390.0AY829439.1 Pennisetum glaucum DREB 2A mRNA, complete cds.
GenBankDQ2276970.0DQ227697.1 Pennisetum glaucum transcription factor DREB2A gene, complete cds.
GenBankKC6886990.0KC688699.1 Cenchrus americanus dehydration responsive element binding protein 2A (DREB2A) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962409.10.0dehydration-responsive element-binding protein 2B isoform X2
SwissprotQ5W6R43e-66DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B
TrEMBLK3Z7V10.0K3Z7V1_SETIT; Uncharacterized protein
TrEMBLK3Z8X60.0K3Z8X6_SETIT; Uncharacterized protein
STRINGSi022619m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.18e-29DRE-binding protein 2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]