PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G279600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 194aa    MW: 19908.3 Da    PI: 7.1948
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G279600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.8e-2053102356
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+G+r+++ +grW+AeIrdp++    +r++lg++ t+e+Aa+a++ a+++++g+
  Sevir.3G279600.1.p  53 YRGIRRRP-WGRWAAEIRDPRK---GARVWLGTYTTPEDAARAYDVAAREIRGA 102
                         9*******.**********954...4*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.85652109IPR001471AP2/ERF domain
SMARTSM003804.5E-3552115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-3152109IPR001471AP2/ERF domain
PfamPF008471.8E-1352101IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2252110IPR016177DNA-binding domain
PRINTSPR003671.4E-105364IPR001471AP2/ERF domain
CDDcd000181.57E-2753111No hitNo description
PRINTSPR003671.4E-107591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MCGGAIIADF VPAGARRPAT SSTDDTTSAS VLSGDEELVK AARLPAPGRK TAYRGIRRRP  60
WGRWAAEIRD PRKGARVWLG TYTTPEDAAR AYDVAAREIR GAKAKLNFPP AVGPGGAPSA  120
AKKRRKVPAA EESSGSSSPA AAVVGAAVAD GGGGAETLRD CMCGLEAFLG LEHAGAEEGD  180
DVEAWDAVDL MFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2153115669ATERF1
3gcc_A3e-2153115669ATERF1
5wx9_A1e-20531151578Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121125KKRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G279600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0643973e-91BT064397.1 Zea mays full-length cDNA clone ZM_BFc0165J07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962330.11e-133ethylene-responsive transcription factor ERF071
SwissprotP427361e-33RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLK3Z9V81e-131K3Z9V8_SETIT; Uncharacterized protein
STRINGSi023329m1e-132(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.18e-32ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Bueso E, et al.
    The lithium tolerance of the Arabidopsis cat2 mutant reveals a cross-talk between oxidative stress and ethylene.
    Plant J., 2007. 52(6): p. 1052-65
    [PMID:17931347]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen YC, et al.
    Root defense analysis against Fusarium oxysporum reveals new regulators to confer resistance.
    Sci Rep, 2014. 4: p. 5584
    [PMID:24998294]
  4. Deslauriers SD,Alvarez AA,Lacey RF,Binder BM,Larsen PB
    Dominant gain-of-function mutations in transmembrane domain III of ERS1 and ETR1 suggest a novel role for this domain in regulating the magnitude of ethylene response in Arabidopsis.
    New Phytol., 2015. 208(2): p. 442-55
    [PMID:25988998]
  5. Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F
    Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana.
    Plant Sci., 2015. 236: p. 37-43
    [PMID:26025519]
  6. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  7. Liu W, et al.
    Ethylene response factor AtERF72 negatively regulates Arabidopsis thaliana response to iron deficiency.
    Biochem. Biophys. Res. Commun., 2017. 491(3): p. 862-868
    [PMID:28390898]
  8. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]