PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G243100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 217aa    MW: 21781.3 Da    PI: 10.1765
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G243100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.11.4e-151767155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++y+GVr++  +g+Wv+eIr+p +   r r +lg++  +e Aa a++aa+  l+g
  Sevir.3G243100.1.p 17 CRYRGVRRRA-WGKWVSEIRVPGT---RERLWLGSYAAPEAAAVAHDAAACLLRG 67
                        78*****777.**********943...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.7E-91767IPR001471AP2/ERF domain
PROSITE profilePS5103220.6921880IPR001471AP2/ERF domain
SMARTSM003802.2E-241886IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-151880IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-241881IPR001471AP2/ERF domain
PRINTSPR003678.6E-81930IPR001471AP2/ERF domain
PRINTSPR003678.6E-84157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MSRAASGGGG RGAERRCRYR GVRRRAWGKW VSEIRVPGTR ERLWLGSYAA PEAAAVAHDA  60
AACLLRGLAG AAAAGHLNFP ERAACYAAHR GGRATQPPLS PRSVQRVASD AGMAADAQLV  120
DARAALPSPS RPVRAAVGTT AGAASVGIGA ARGGEGATAQ GAAYAPAPPY SNCSSGSSST  180
YWSTPSAGGG SRSSSAGSDQ LLVYGDISVD DIEILM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G243100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962047.11e-146ethylene-responsive transcription factor RAP2-1-like
TrEMBLA0A368QIC41e-145A0A368QIC4_SETIT; Uncharacterized protein
STRINGPavir.J32663.1.p3e-78(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.14e-10ERF family protein