PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G242500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 402aa    MW: 44707.8 Da    PI: 12.0938
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G242500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.33.7e-50731971128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeelv++yL+++++g ++++  +i+e+d+yk++Pw+Lp+++  +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk+
  Sevir.3G242500.1.p  73 LPPGFRFHPTDEELVTHYLCRRCAGLPISV-PIIAEIDLYKYDPWQLPRMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKP 162
                         79****************************.88***************7666789************************************ PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         v +   +   +kk Lvfy g+ap+g kt+W+mheyrl
  Sevir.3G242500.1.p 163 VGT--PKPLAIKKALVFYAGKAPRGDKTNWIMHEYRL 197
                         *99..7789**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-5568201IPR003441NAC domain
PROSITE profilePS5100553.17573217IPR003441NAC domain
PfamPF023658.5E-2674197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MTRRALYMAR VPHGARFHAS SRLAAGLEER GGIESAADLT SQFELRKRNQ PPIEEEEMSG  60
GGVPAAQPQE LQLPPGFRFH PTDEELVTHY LCRRCAGLPI SVPIIAEIDL YKYDPWQLPR  120
MALYGEKEWY FFSPRDRKYP NGSRPNRAAG TGYWKATGAD KPVGTPKPLA IKKALVFYAG  180
KAPRGDKTNW IMHEYRLADV DRSARKKNHS LRMIGCCAES TTRRARRRSR RPAPATGPGR  240
AAATVCRRPW PWARRRSRSH PCCRPPPPGP GTRRRRSRSW QRTTRSGRRT RCPGRTARTR  300
AARGTRWRPP RPAAAAAASG PRCRASPRSP SGSARSQAAP ARASTRPARC SAGTTSLARR  360
RAAAATRCSR TSSRTGASRT EEGRWQVVVT SWDRWDRGGS A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-687019712140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222230RRARRRSRR
2253275RRRSRSHPCCRPPPPGPGTRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G242500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0373230.0BT037323.1 Zea mays full-length cDNA clone ZM_BFb0162P01 mRNA, complete cds.
GenBankKM9876120.0KM987612.1 Zea mays NAC protein (SNAC052) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK3Z7611e-147K3Z761_SETIT; Uncharacterized protein
STRINGSi022381m1e-148(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34173782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-85NAC family protein