PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G241000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 454aa    MW: 49952.5 Da    PI: 4.3522
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G241000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.53.2e-5061331128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lppGfrFhPtd el ++yLk+k+ gkkl + ++i+evd+yk+ PwdLp k ++++++ ew+fF++rdkky++g+r+nrat +gyWk++gkd
  Sevir.3G241000.1.p   6 LPPGFRFHPTDVELTSYYLKRKIMGKKLIV-DAISEVDLYKFPPWDLPdKsSLRSKDLEWFFFCPRDKKYPNGSRTNRATPNGYWKTSGKD 95 
                         79*************************988.89**************95335666777********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++  +++ vg+kktL+f++g+apkg +tdWvm ey++
  Sevir.3G241000.1.p  96 RTIML-NSRIVGMKKTLIFHEGKAPKGDRTDWVMYEYKM 133
                         *****.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-613156IPR003441NAC domain
PROSITE profilePS5100557.3886156IPR003441NAC domain
PfamPF023652.5E-257132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MAQTSLPPGF RFHPTDVELT SYYLKRKIMG KKLIVDAISE VDLYKFPPWD LPDKSSLRSK  60
DLEWFFFCPR DKKYPNGSRT NRATPNGYWK TSGKDRTIML NSRIVGMKKT LIFHEGKAPK  120
GDRTDWVMYE YKMEDEELVS AGFSKDAFVL CKIFKKSGLG PRIGEQYGAP FNEAEWDNAE  180
AEASMFPLMT SSEVVNPTED SHAQHEVPAG AVREPPLQNA SAACAGEESS FAHATATTCV  240
EDLTFGYTVA GSAIQDIPAQ QSGEGVVSAN NISNGVDDMY SPHDCDGFLL EELSRFLNDS  300
PLHDATLGES SALPPMSEAE AHAFEVNTVG LYNELSGLAG LGVPNNFSTS NVGTTDYTIL  360
PPDRELSTDD YIELNDLLAS DPSFPSEYPA QNNQFMQHPQ AQSMYNGHHD VATLSGPVEP  420
TMPSIFDVFP PNNGGFTDEA TNYSYPNMQY PFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-51215711169Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G241000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660428.10.0NAC domain-containing protein 82
TrEMBLA0A368QI290.0A0A368QI29_SETIT; Uncharacterized protein
STRINGPavir.J02083.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47313664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.16e-81NAC domain containing protein 103