PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.3G237700.3.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

MYB

Protein Properties

Length: 261aa MW: 27751.5 Da PI: 8.7041

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.3G237700.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.4	7.1e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lv +++ +G g+W++ ++ g+ R++k+c++rw +yl Sevir.3G237700.3.p 14 KGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	58.1	2e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eEdel+++++++lG++ W++Ia ++ gRt++++k++w+++ Sevir.3G237700.3.p 67 RGNFTDEEDELIIRLHALLGNK-WSLIAGQLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.186	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.22E-29	13	108	IPR009057	Homeodomain-like
SMART	SM00717	7.6E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	4.15E-11	16	61	No hit	No description
PROSITE profile	PS51294	28.865	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-28	65	116	IPR009057	Homeodomain-like
SMART	SM00717	2.1E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-16	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	5.72E-13	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDERLVAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWMNY 60 LRPDLKRGNF TDEEDELIIR LHALLGNKWS LIAGQLPGRT DNEIKNYWNT HIKRKLLARG 120 IDPQTHRPLG AGGAGADAAA ATGIAAHRAA ALLHPAAAAP ASPVALAVIK PAPAESSDDG 180 GRSSSSSGGA STGEPRCPDL NLDLSVGLPA ADTPTSQPQP VVCLCYRLGL RAGEACGCQA 240 DKPGPQGFRY FRPLEQGQYI *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-29	14	116	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.3G237700.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF372521	0.0	EF372521.1 Saccharum officinarum MYB protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961985.1	0.0	myb-related protein 308-like
Swissprot	P81393	1e-94	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A368QI74	0.0	A0A368QI74_SETIT; Uncharacterized protein
STRING	ORUFI05G18670.1	1e-130	(Oryza rufipogon)
STRING	OS05T0429900-01	1e-130	(Oryza sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	1e-86	myb domain protein 4

Link Out ? help Back to Top
Phytozome	Sevir.3G237700.3.p

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]