PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G233800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 337aa    MW: 34643.7 Da    PI: 6.1757
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G233800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.4e-20142191255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  Sevir.3G233800.1.p 142 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 191
                         7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.686142199IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-22142200IPR016177DNA-binding domain
SMARTSM003801.7E-36142205IPR001471AP2/ERF domain
PfamPF008471.0E-13142191IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-33142200IPR001471AP2/ERF domain
PRINTSPR003671.0E-11143154IPR001471AP2/ERF domain
CDDcd000185.77E-14150201No hitNo description
PRINTSPR003671.0E-11165181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MRAAAALQPR VVGDTMADDG RRRSRLAGWT AAEEDGDAAA SAVLSGEYQA LEMSTMVSAL  60
AHVVAGGDDE GYPPAAMAAG GSYVQPAQQW GGSYSSAAAR TPDHFFPAGE EQQGHHHHDV  120
RQGAMEEHSP TAAGEAGGGG RRYRGVRQRP WGKWAAEIRD PHKAARVWLG TFETAEAAAR  180
AYDEAALRFR GSRAKLNFPE DARLTTPSNA VAAAPAAAAA ASATAAMAAS SAGAYPASAA  240
SEYLQYQMLL QGAAAGHGGG FPQYYGGGAM SSSSGSYSFP ASSVTVASVP PSSAPGYGEA  300
AQWGSTSWPE SAWSYPATTG SWSDSSHYPP STRPPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-24140199363ATERF1
3gcc_A5e-24140199363ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G233800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1053186e-94AC105318.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1058_F05, complete sequence.
GenBankAP0149616e-94AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126136e-94CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700189.11e-141LOW QUALITY PROTEIN: ethylene-responsive transcription factor ABR1-like
TrEMBLK3Z7Z31e-162K3Z7Z3_SETIT; Uncharacterized protein
STRINGSi022663m1e-163(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-16ethylene response factor 110