PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G230500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 267aa MW: 29271.3 Da PI: 4.9699 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 131.1 | 8.1e-41 | 5 | 136 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 l+pGfrF Pt+eel+++yL++k++g + ++e+vi+ +d++ ++Pw+Lp+ +++++ + w++F++r++++a+g r++r+t sgyWka Sevir.3G230500.1.p 5 LAPGFRFYPTEEELLCFYLRNKLDGVRsGDIERVIPVADVCALDPWQLPEayrgEFSGNGEPWFYFCPRQEREARGGRPSRTTPSGYWKAA 95 579*********************9986677788***************6456655568889***************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 g+ v++++g+ +g+kkt+vfy+grap g kt+W ++ey+ Sevir.3G230500.1.p 96 GTPGLVYAADGRPIGTKKTMVFYRGRAPAGAKTEWKLNEYK 136 ****************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-45 | 4 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.423 | 5 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-21 | 7 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MTDQLAPGFR FYPTEEELLC FYLRNKLDGV RSGDIERVIP VADVCALDPW QLPEAYRGEF 60 SGNGEPWFYF CPRQEREARG GRPSRTTPSG YWKAAGTPGL VYAADGRPIG TKKTMVFYRG 120 RAPAGAKTEW KLNEYKSLEE EDEYAAAAHA AVPAPSFALQ TRSEFTLCRL YTKSGCPRQF 180 DRRPGAAAAA GGGSENPAAA ALANGEETGR KRRRAAPSED TSSSDGGGDP STQQRLRQRG 240 ADEGPNDDMV NLSELLDYWF DTENSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-30 | 5 | 173 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-30 | 5 | 173 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-30 | 5 | 173 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-30 | 5 | 173 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 7e-30 | 5 | 173 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 7e-30 | 5 | 173 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 208 | 214 | GRKRRRA |
2 | 209 | 213 | RKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G230500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961932.1 | 0.0 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 2e-64 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | K3Z8U6 | 0.0 | K3Z8U6_SETIT; Uncharacterized protein | ||||
STRING | Si022966m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 2e-65 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G230500.1.p |
Publications ? help Back to Top | |||
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