PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.3G229900.5.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 454aa MW: 50036.2 Da PI: 5.2898

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.3G229900.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.9	1.6e-11	198	227	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ Sevir.3G229900.5.p 198 AKTERRLAQNREAARKSRLRKKAYVQQLET 227 799*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.8E-6	195	271	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.312	197	240	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.5E-8	198	228	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.94E-7	199	241	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.1E-7	199	228	No hit	No description
PROSITE pattern	PS00036	0	202	217	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.4E-28	279	354	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MAQGEESSWW VTSDHGRALP FSQALACGIQ SHAPAARPAN FLELQPSATA YFGELEEALI 60 HGSCTSIDPS MIGRDVDTEC NKTAGYLAAR PPTLEIFPSW PMSHLQQPYS GNSHSVGSTS 120 ESSSGQNAMP QAELVSPGSM RADSGQQQEV LMVTVDDYNY EQGLGVAATT APIFQQHTES 180 QDKRKQGSTR KDGKLLDAKT ERRLAQNREA ARKSRLRKKA YVQQLETSRI RLQQIEQELQ 240 GARSQGLFPG GGSASGDMNS GALMFDMEYA RWLEDDSKHM TQLQGILQAQ NIDANLGTIV 300 EECMRHYDEL FHLRAMLARS DVFHLMTGLW ATTAERCFLW MGGFRPSEIL KMLIPQLDPL 360 TEQQLLGMCN LQRSSEQTEE ALVQGLQQLH KSLADAVGAS PLSDGANVAN YTALMALALD 420 RLDTLESFYR QVSIYSHGRA TFFFFFGNVA VQP*

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MAQGEESSWW VTSDHGRALP FSQALACGIQ SHAPAARPAN FLELQPSATA YFGELEEALI  60
HGSCTSIDPS MIGRDVDTEC NKTAGYLAAR PPTLEIFPSW PMSHLQQPYS GNSHSVGSTS  120
ESSSGQNAMP QAELVSPGSM RADSGQQQEV LMVTVDDYNY EQGLGVAATT APIFQQHTES  180
QDKRKQGSTR KDGKLLDAKT ERRLAQNREA ARKSRLRKKA YVQQLETSRI RLQQIEQELQ  240
GARSQGLFPG GGSASGDMNS GALMFDMEYA RWLEDDSKHM TQLQGILQAQ NIDANLGTIV  300
EECMRHYDEL FHLRAMLARS DVFHLMTGLW ATTAERCFLW MGGFRPSEIL KMLIPQLDPL  360
TEQQLLGMCN LQRSSEQTEE ALVQGLQQLH KSLADAVGAS PLSDGANVAN YTALMALALD  420
RLDTLESFYR QVSIYSHGRA TFFFFFGNVA VQP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.3G229900.5.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961926.1	0.0	transcription factor TGAL5 isoform X1
Refseq	XP_022680634.1	0.0	transcription factor TGAL5 isoform X1
Swissprot	Q6F2N0	0.0	TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBL	A0A368QHY5	0.0	A0A368QHY5_SETIT; Uncharacterized protein
STRING	Si022106m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-100	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sevir.3G229900.5.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]