PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G222700.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 486aa MW: 54372.7 Da PI: 7.9328 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.3 | 1.1e-10 | 2 | 33 | 16 | 48 |
HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 vk++G++ W++Iar + gR +kqc++rw+++l Sevir.3G222700.2.p 2 VKKYGPKKWSLIARSLD-GRIGKQCRERWHNHL 33 9****************.*************97 PP | |||||||
2 | Myb_DNA-binding | 54 | 3.9e-17 | 39 | 82 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + +W+ eE+ +da++++G++ W+ Ia+ ++ gRt++++k++w++ Sevir.3G222700.2.p 39 KEAWSVEEERVVADAHRLHGNK-WAEIAKLLP-GRTDNSIKNHWNS 82 579*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.199 | 1 | 33 | IPR017930 | Myb domain |
CDD | cd00167 | 4.63E-9 | 1 | 33 | No hit | No description |
SMART | SM00717 | 0.39 | 1 | 35 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-18 | 1 | 40 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-8 | 2 | 33 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.21E-26 | 12 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.536 | 34 | 88 | IPR017930 | Myb domain |
SMART | SM00717 | 7.0E-15 | 38 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-15 | 39 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-21 | 41 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.09E-12 | 41 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 486 aa Download sequence Send to blast |
MVKKYGPKKW SLIARSLDGR IGKQCRERWH NHLDPQIIKE AWSVEEERVV ADAHRLHGNK 60 WAEIAKLLPG RTDNSIKNHW NSSLRKRLGD YNASRALPVS VHMVHNSFKH EKAKLSGGNH 120 IDLNKEPNIN LERPPEIVDH SEHATHLHAC SLKNIKSCSD FLSLAMPTAQ PKKLCEMFGG 180 GYSAVALAGI QGLKMDFVHD KGTEINVVCK ERLKNDLLNV EVRKLDHATD TIGYSGSAKV 240 EGKTVNNMCK LFLPNESNSF GSLCYEIPKL EDVVPCHSPV FSTPHIQQCC EDGFLPPVGY 300 TTSSRDGDIS DQLSVESILK SAAENFPGTP SILRRRKRET PAHDEDSNLK IAILHSNSFH 360 TPLGKCTTES PHSFKTASFL SLGPPDNEGL SATLGSFDVS PPYRLRSKRM AILKTVEKKH 420 LNFSSDEMDN YDSPDTMKKY SSWKTECTNT YTDVSSKQEM KMTEHMVDLE TLAKDFTHTT 480 KLDLI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-40 | 1 | 88 | 18 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-40 | 1 | 88 | 18 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G222700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961857.1 | 0.0 | transcription factor MYB3R-2 | ||||
Refseq | XP_014660295.1 | 0.0 | transcription factor MYB3R-2 | ||||
Refseq | XP_022681301.1 | 0.0 | transcription factor MYB3R-2 | ||||
TrEMBL | K3Z4L6 | 0.0 | K3Z4L6_SETIT; Uncharacterized protein | ||||
STRING | Si021484m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-44 | myb domain protein 3r-5 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G222700.2.p |