PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G222700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 619aa MW: 68734.8 Da PI: 7.8817 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.7 | 1.7e-15 | 68 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT +Ede+l +av g++Wk+Ia+ ++ Rt qc +rwqk+l Sevir.3G222700.1.p 68 KGGWTLDEDEKLRKAVGACNGKNWKKIAESFP-DRTSVQCLHRWQKVL 114 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 59.7 | 6.6e-19 | 120 | 166 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+++++ vk++G++ W++Iar + gR +kqc++rw+++l Sevir.3G222700.1.p 120 KGPWTQEEDDIIINMVKKYGPKKWSLIARSLD-GRIGKQCRERWHNHL 166 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 53.5 | 5.4e-17 | 172 | 215 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + +W+ eE+ +da++++G++ W+ Ia+ ++ gRt++++k++w++ Sevir.3G222700.1.p 172 KEAWSVEEERVVADAHRLHGNK-WAEIAKLLP-GRTDNSIKNHWNS 215 579*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.208 | 63 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-13 | 67 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-13 | 68 | 114 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.73E-15 | 69 | 124 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.2E-23 | 70 | 125 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.36E-11 | 71 | 114 | No hit | No description |
PROSITE profile | PS51294 | 31.769 | 115 | 170 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-31 | 117 | 213 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-17 | 119 | 168 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-17 | 120 | 166 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.18E-15 | 122 | 166 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-26 | 126 | 170 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.697 | 171 | 221 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-21 | 171 | 221 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 171 | 219 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-15 | 172 | 215 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.63E-11 | 174 | 217 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 619 aa Download sequence Send to blast |
MGAMAAVKVE EPEGSTGNWW NLAASSPSPS VSEAGSYGGG ALMSPVESNP ADSVSGRRRT 60 SGPVRRAKGG WTLDEDEKLR KAVGACNGKN WKKIAESFPD RTSVQCLHRW QKVLNPELIK 120 GPWTQEEDDI IINMVKKYGP KKWSLIARSL DGRIGKQCRE RWHNHLDPQI IKEAWSVEEE 180 RVVADAHRLH GNKWAEIAKL LPGRTDNSIK NHWNSSLRKR LGDYNASRAL PVSVHMVHNS 240 FKHEKAKLSG GNHIDLNKEP NINLERPPEI VDHSEHATHL HACSLKNIKS CSDFLSLAMP 300 TAQPKKLCEM FGGGYSAVAL AGIQGLKMDF VHDKGTEINV VCKERLKNDL LNVEVRKLDH 360 ATDTIGYSGS AKVEGKTVNN MCKLFLPNES NSFGSLCYEI PKLEDVVPCH SPVFSTPHIQ 420 QCCEDGFLPP VGYTTSSRDG DISDQLSVES ILKSAAENFP GTPSILRRRK RETPAHDEDS 480 NLKIAILHSN SFHTPLGKCT TESPHSFKTA SFLSLGPPDN EGLSATLGSF DVSPPYRLRS 540 KRMAILKTVE KKHLNFSSDE MDNYDSPDTM KKYSSWKTEC TNTYTDVSSK QEMKMTEHMV 600 DLETLAKDFT HTTKLDLI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 8e-69 | 67 | 221 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 8e-69 | 67 | 221 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G222700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961857.1 | 0.0 | transcription factor MYB3R-2 | ||||
Refseq | XP_014660295.1 | 0.0 | transcription factor MYB3R-2 | ||||
Refseq | XP_022681301.1 | 0.0 | transcription factor MYB3R-2 | ||||
Swissprot | Q0JHU7 | 0.0 | MB3R2_ORYSJ; Transcription factor MYB3R-2 | ||||
TrEMBL | K3Z4L6 | 0.0 | K3Z4L6_SETIT; Uncharacterized protein | ||||
STRING | Si021484m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3099 | 38 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 6e-93 | myb domain protein 3r-5 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G222700.1.p |
Publications ? help Back to Top | |||
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