PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.3G212900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 239aa MW: 25089.7 Da PI: 5.5788 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.6 | 1.7e-19 | 62 | 111 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr+p + + +r++lg+f+t+ +Aa a+++a+ +++g+ Sevir.3G212900.1.p 62 YRGVRQRR-WGKWVAEIREP---N-CgRRHWLGTFDTPVDAALAYDRAAVAYHGN 111 9****998.**********8...3.57*************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.0E-29 | 61 | 119 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-22 | 61 | 119 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.8E-34 | 61 | 124 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.47 | 61 | 118 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.95E-29 | 61 | 120 | No hit | No description |
Pfam | PF00847 | 5.6E-12 | 62 | 110 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-9 | 62 | 73 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-9 | 84 | 100 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 239 aa Download sequence Send to blast |
MGVGLGSKEM GRAPAAVPTS SGTGTQQARA NGGANGTPGA GRSRSVSAQR GVGGPDNTRH 60 NYRGVRQRRW GKWVAEIREP NCGRRHWLGT FDTPVDAALA YDRAAVAYHG NLARLNFPAD 120 NAAAVTIATA APAQRQPSSC APATTADVFE EHEVKPLVAV SQGGGGAETV SQQQQQQGAS 180 WLSPELLFDD DPNDIAMYID FDAVAHMVPC YPGIKIEDCQ PDGFDGDAIH SPLWPLGD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-16 | 61 | 118 | 5 | 63 | ATERF1 |
3gcc_A | 1e-16 | 61 | 118 | 5 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.3G212900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC135924 | 1e-35 | AC135924.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0486C01, complete sequence. | |||
GenBank | AK102559 | 1e-35 | AK102559.1 Oryza sativa Japonica Group cDNA clone:J033097H15, full insert sequence. | |||
GenBank | AK103822 | 1e-35 | AK103822.1 Oryza sativa Japonica Group cDNA clone:J033147H24, full insert sequence. | |||
GenBank | AK109855 | 1e-35 | AK109855.1 Oryza sativa Japonica Group cDNA clone:002-148-G01, full insert sequence. | |||
GenBank | AP014961 | 1e-35 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 1e-35 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. | |||
GenBank | CT834242 | 1e-35 | CT834242.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109B04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961770.1 | 1e-176 | dehydration-responsive element-binding protein 2D | ||||
Swissprot | Q65WX1 | 1e-32 | DRE2D_ORYSJ; Dehydration-responsive element-binding protein 2D | ||||
TrEMBL | A0A368QHK4 | 1e-174 | A0A368QHK4_SETIT; Uncharacterized protein | ||||
STRING | Si024427m | 1e-159 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14102 | 22 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75490.1 | 3e-20 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.3G212900.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|