PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.3G203000.2.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 329aa MW: 35426.9 Da PI: 5.5356

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.3G203000.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.2	2.4e-15	258	301	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++Lkk+ Sevir.3G203000.2.p 258 RRQKRMIKNRESAARSRARKQAYTNELENKVSLLEEENERLKKQ 301 69***************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	7.4E-15	253	301	No hit	No description
SMART	SM00338	4.2E-12	254	326	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.542	256	301	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.13E-12	258	303	No hit	No description
CDD	cd14707	4.73E-26	258	303	No hit	No description
Pfam	PF00170	5.3E-14	258	301	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	261	276	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MIQAMASQAG GGGGGDAGSA QRGQIQGLAR QGSLYNLTLD EVQNHLGEPL LSMNFDDLLK 60 TVFPDGVDPN GPVIGKPDPA SSLQRQGSIV MPPQLSKKTV DEVWKGIQDG PETSAREGGR 120 HRRERQPTLG EMTLEDFLVK AGVVPEGLMR DSDDLLVNMD TVGSNVMVAG TSSLNPGAQL 180 LQQYQQQALE SQQPSLVGSY MAGQLAPQPL SVATGAMLDS MYSDGQITSP TLGAFSDPQT 240 PGRKRGVSGE VVDKVIERRQ KRMIKNRESA ARSRARKQAY TNELENKVSL LEEENERLKK 300 QKEFGEILSS APPPEPKYQL RRTSSSAL*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.3G203000.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT061345	0.0	BT061345.1 Zea mays full-length cDNA clone ZM_BFb0137L05 mRNA, complete cds.
GenBank	EU966389	0.0	EU966389.1 Zea mays clone 294076 bZIP transcription factor mRNA, complete cds.
GenBank	KJ726913	0.0	KJ726913.1 Zea mays clone pUT3458 bZIP transcription factor (bZIP96) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961686.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X3
Swissprot	Q9LES3	6e-79	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	K3Z7W9	0.0	K3Z7W9_SETIT; Uncharacterized protein
STRING	Si022639m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	1e-79	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Sevir.3G203000.2.p

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]