PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G198900.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YC
Protein Properties Length: 314aa    MW: 33776.7 Da    PI: 4.826
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G198900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC569.1e-186861898
               NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                        ++++P  rikki++adedv +i+  +Pvl+ska elf+ +l  r++  +  +  +t+  s ++++++  +++dfl ++v +
  Sevir.3G198900.2.p  6 DTRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITIRKGVKTVGSSHLKQCIQTYNVYDFLREVVSK 86
                        5789************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-23372IPR009072Histone-fold
SuperFamilySSF471136.64E-19489IPR009072Histone-fold
PfamPF008081.9E-16871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MRKKLDTRFP APRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YDITIRKGVK  60
TVGSSHLKQC IQTYNVYDFL REVVSKVPDT GTSDAIADDK LGKRRKAEED GSEEELKRTR  120
NEAESHTSNG RGRGRGRGRG RRGGRGAWRE VVITHEQFVE NQSSKPAGLK VEIADEVPDA  180
TEAKEATPVS SARASMRNID LNLDPAEEDD EVAVPPEAQP SAPATDPAAA NLGLTAPATS  240
SAAANLGLTT PATSSAATTA GPSVPGLKEG AKLKDLLGGW ELPDMNKMDM DPVQFALSSN  300
HKLDDDEDYD NED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-21272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130139RGRGRGRGRG
2130140RGRGRGRGRGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G198900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0554820.0BT055482.1 Zea mays full-length cDNA clone ZM_BFb0340H19 mRNA, complete cds.
GenBankJX4285130.0JX428513.1 Zea mays subsp. mays clone pUT3111 CA5P10 CCAAT-HAP5 type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961646.10.0dr1-associated corepressor isoform X2
TrEMBLK3Z8500.0K3Z850_SETIT; Uncharacterized protein
STRINGSi022720m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.12e-54nuclear factor Y, subunit C11