PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G198900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NF-YC | ||||||||
Protein Properties | Length: 343aa MW: 36827.1 Da PI: 4.9329 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 53.3 | 6.2e-17 | 35 | 115 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++ rikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ s ++++++ +++dfl ++v + Sevir.3G198900.1.p 35 DTHFSAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITIRKGVKTVGSSHLKQCIQTYNVYDFLREVVSK 115 5678889*********************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.4E-22 | 32 | 101 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.3E-15 | 42 | 100 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 2.29E-18 | 47 | 117 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MRKKLDTRFP ALVDKLCSGE ETSGTVSGAM RKKLDTHFSA PRIKKIMQAD EDVGKIALAV 60 PVLVSKALEL FLQDLCDRTY DITIRKGVKT VGSSHLKQCI QTYNVYDFLR EVVSKVPDTG 120 TSDAIADDKL GKRRKAEEDG SEEELKRTRN EAESHTSNGR GRGRGRGRGR RGGRGAWREV 180 VITHEQFVEN QSSKPAGLKV EIADEVPDAT EAKEATPVSS ARASMRNIDL NLDPAEEDDE 240 VAVPPEAQPS APATDPAAAN LGLTAPATSS AAANLGLTTP ATSSAATTAG PSVPGLKEGA 300 KLKDLLGGWE LPDMNKMDMD PVQFALSSNH KLDDDEDYDN ED* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 3e-19 | 31 | 101 | 5 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 159 | 168 | RGRGRGRGRG |
2 | 159 | 169 | RGRGRGRGRGR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G198900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055482 | 0.0 | BT055482.1 Zea mays full-length cDNA clone ZM_BFb0340H19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961645.1 | 0.0 | dr1-associated corepressor isoform X1 | ||||
TrEMBL | A0A368QGQ1 | 0.0 | A0A368QGQ1_SETIT; Uncharacterized protein | ||||
STRING | Si022720m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2172 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 1e-51 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G198900.1.p |