PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G196300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 243aa    MW: 24740.4 Da    PI: 8.6653
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G196300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.23.1e-213081156
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        ++y+GVr ++ +gr++AeIrdp    k+ r++lg+f+taeeAa+a++aa+++++g+
  Sevir.3G196300.1.p 30 PHYRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTFDTAEEAARAYDAAAREYRGA 81
                        68********.**********83...36**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-143080IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-323188IPR001471AP2/ERF domain
SMARTSM003801.1E-373194IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-233189IPR016177DNA-binding domain
PROSITE profilePS5103224.2893188IPR001471AP2/ERF domain
CDDcd000182.63E-163186No hitNo description
PRINTSPR003671.5E-113243IPR001471AP2/ERF domain
PRINTSPR003671.5E-115470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAPRTSEKTM TPAAAATGLX LGGGGGAGGP HYRGVRKRPW GRYAAEIRDP AKKSRVWLGT  60
FDTAEEAARA YDAAAREYRG AKAKTNFPFP SSSSMPPVAT VAAAATGGSR SGDSSTVESF  120
GGDVQAPMQA MPLPPSLELD LFHRAAAAGT HAGASVRFPF NSYPVTHHYY FFGQAAAAAA  180
AGCHMQLKLA PTVTVAAVAP SDSSDSSSVV DLSPSPPAAV AAKKASAFDL DLNCPPPAEA  240
EA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-232793168ATERF1
3gcc_A3e-232793168ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G196300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961628.11e-170ethylene-responsive transcription factor 8
TrEMBLK3Z9671e-169K3Z967_SETIT; Uncharacterized protein
STRINGSi023088m1e-170(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.18e-18erf domain protein 9