PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G189300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family CPP
Protein Properties Length: 361aa    MW: 39996.2 Da    PI: 8.0942
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G189300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.94.9e-1468105340
                 TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         +k+C Ckks+Clk+YC Cfa g +Cse+C C+ C+Nk+
  Sevir.3G189300.1.p  68 CKHCACKKSRCLKLYCPCFAGGGYCSEKCGCQPCFNKD 105
                         89**********************************97 PP
2TCR50.34.9e-16153189339
                 TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                         ++gCnCkks+ClkkYC+C+++g+ Cs  C+C+dC+N 
  Sevir.3G189300.1.p 153 RRGCNCKKSSCLKKYCDCYQDGTGCSLFCRCDDCQNP 189
                         589*********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.3E-1366107IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163430.05467191IPR005172CRC domain
PfamPF036384.6E-1069104IPR005172CRC domain
SMARTSM011147.7E-15151192IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.5E-11154188IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEATPISVKP PSPAPAAPPP AALETRDLPT HAVATTEVEP SSMNQLAVAV TPDPKRQKVE  60
ETADGNGCKH CACKKSRCLK LYCPCFAGGG YCSEKCGCQP CFNKDAYAET VQTTRKVLLS  120
RQKRMSMKIN RRSEANAEAM EDAHHSSSST PPRRGCNCKK SSCLKKYCDC YQDGTGCSLF  180
CRCDDCQNPF GKNEGIMAED SKRYLYTGAD LDHSEGEHEF VVERSPRLQS PISKESSFHQ  240
TPPHLRASSR DAHVFPQAVL QWQAPPRSWH CSNKRNSNDR AMDDSANYKN SHNDWLLPKP  300
EDSYSISKCV QILNGMVELS QVEKSVAPDV FLLPGNREIF ISLGGDVRAL WLKRKIQHLT  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-126918812120Protein lin-54 homolog
5fd3_B7e-126918812120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G189300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961563.10.0CRC domain-containing protein TSO1
TrEMBLK3Z7D00.0K3Z7D0_SETIT; Uncharacterized protein
STRINGSi022450m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101592937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.12e-45Tesmin/TSO1-like CXC domain-containing protein