PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G187000.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 450aa MW: 48755.1 Da PI: 5.6371 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 57 | 6.8e-18 | 17 | 143 | 11 | 127 |
NAM 11 deelvveyLkkkvegkklelee..vikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdke 91 d+ lv +L+ k++g+ l+++ +++++diy ++P +L + k+e +w+fF++ + k+++++rk+r++ +g+W++ ++ Sevir.3G187000.2.p 17 DDGLV-AFLRMKLAGEALPAAAgtHFHDCDIYAADPATLTAgyrpapVRKGEGGSWFFFTHVRPKSSSDSRKKRVVGggAGTWHSERAPRA 106 55677.89********966643226**************8556776533445569*******************87755889********* PP NAM 92 vlskkgelvglkktLvfykg.rapkgektdWvmheyr 127 vl+ +g+ vg + + + ++ ++++e+tdW m e++ Sevir.3G187000.2.p 107 VLDGEGNCVGHSQYFSYKRKnGKNSSERTDWYMVEFT 143 ******************652677779********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.875 | 6 | 168 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.01E-22 | 21 | 167 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MPPPPQPGDP AASTLADDGL VAFLRMKLAG EALPAAAGTH FHDCDIYAAD PATLTAGYRP 60 APVRKGEGGS WFFFTHVRPK SSSDSRKKRV VGGGAGTWHS ERAPRAVLDG EGNCVGHSQY 120 FSYKRKNGKN SSERTDWYMV EFTEGQEGDH ERIHGGEPVL VLCKIYRAHS GSRSSSSSSR 180 SVRKRKATEE HADASSAPVK AKRRLFNSSA PTLLPASQEQ VSSRVTMVTS RLESQGEAAM 240 FEQEDCHGEL GDALDQLIFW ASQSNASDYL KLSPNPEASQ EQVSSRVTMA SNTLDGLIFW 300 ASQSKMDSTS DYLKFSPNPD VSASQSKTST TRPSLFMSET EMSQGNIGGT LDDIIFRPEP 360 EPLQGMIGSP ADYLKLPPEP GAAQNMVSTK SPSLFMSESE TTFQGKISSP SDYLRFWSEP 420 EASQGTIDSP SDHLKFNPEP EAAQNMILV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G187000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961531.1 | 0.0 | uncharacterized protein LOC101760926 isoform X3 | ||||
TrEMBL | A0A368QG75 | 0.0 | A0A368QG75_SETIT; Uncharacterized protein | ||||
STRING | Si038541m | 0.0 | (Setaria italica) |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G187000.2.p |