PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G187000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 600aa    MW: 64757.9 Da    PI: 5.0316
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G187000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.21.1e-171714311127
                 NAM  11 deelvveyLkkkvegkklelee..vikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdke 91 
                         d+ lv  +L+ k++g+ l+++   +++++diy ++P +L +        k+e  +w+fF++ + k+++++rk+r++   +g+W++    ++
  Sevir.3G187000.1.p  17 DDGLV-AFLRMKLAGEALPAAAgtHFHDCDIYAADPATLTAgyrpapVRKGEGGSWFFFTHVRPKSSSDSRKKRVVGggAGTWHSERAPRA 106
                         55677.89********966643226**************8556776533445569*******************87755889********* PP

                 NAM  92 vlskkgelvglkktLvfykg.rapkgektdWvmheyr 127
                         vl+ +g+ vg  + + + ++  ++++e+tdW m e++
  Sevir.3G187000.1.p 107 VLDGEGNCVGHSQYFSYKRKnGKNSSERTDWYMVEFT 143
                         ******************652677779********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.8756168IPR003441NAC domain
SuperFamilySSF1019415.23E-2221167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MPPPPQPGDP AASTLADDGL VAFLRMKLAG EALPAAAGTH FHDCDIYAAD PATLTAGYRP  60
APVRKGEGGS WFFFTHVRPK SSSDSRKKRV VGGGAGTWHS ERAPRAVLDG EGNCVGHSQY  120
FSYKRKNGKN SSERTDWYMV EFTEGQEGDH ERIHGGEPVL VLCKIYRAHS GSRSSSSSSR  180
SVRKRKATEE HADASSAPVK AKRRLFNSSA PTLLPASQEQ VSSRVTMVTS RLESQGEAAM  240
FEQEDCHGEL GDALDQLIFW ASQSNASDYL KLSPNPEASQ EQVSSRVTMA SNTLDGLIFW  300
ASQSKMDSTS DYLKFSPNPD VSASQSKTST TRPSLFMSET EMSQGNIGGT LDDIIFRPEP  360
EPLQGMIGSP ADYLKLPPEP GAAQNMVSTK SPSLFMSESE TTFQGKISSP SDYLRFWSEP  420
EASQGTIDSP SDHLKFNPEP EAAQNMVSTK SPSLFMSESE TTLSISEPET TQGKIGSTSD  480
FLRFWPEPEA TQKIGEALQK ASTTPSQLMF EPEVQVPQGE SETATFNWGQ MTGNCAAPAP  540
SHCYGMTDLD DSYWRGNNNN MVSCCHGVGC FVGAPPTLCS TARIPINPSV CGGPALWSC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G187000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961529.10.0uncharacterized protein LOC101760926 isoform X1
TrEMBLA0A368QG750.0A0A368QG75_SETIT; Uncharacterized protein
STRINGSi038541m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16781612