PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.3G186300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 295aa MW: 30831.7 Da PI: 8.7343 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 95 | 1.5e-29 | 58 | 157 | 3 | 99 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaa 91 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +a+++i++l+ ++++++ + + ss +a + + g a Sevir.3G186300.1.p 58 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDAAQHEIDKLPPLQFPPHAQDlvAHLPSSMMAPFANGGGAD 148 78*************************************************************9999933334444444444444444333 PP TCP 92 ksaa.kskk 99 +++a + Sevir.3G186300.1.p 149 RASAaANAT 157 333323333 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 29.688 | 59 | 117 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 9.3E-27 | 59 | 133 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 295 aa Download sequence Send to blast |
MISGNLTNEE LAASRCTKAE GPAAGAVAVA AKSPAVPSSR HWPPSTESRI VRVSRVFGGK 60 DRHSKVRTVK GLRDRRVRLS VPTAIQLYDL QDRLGLSQPS KVVDWLLDAA QHEIDKLPPL 120 QFPPHAQDLV AHLPSSMMAP FANGGGADRA SAAANATTGA ASAAMVDGDK RHCHGAGIKG 180 LMGLNNPVGL VNGAMPLAHG LYYTAGEPWA NGNSVHDQVS HHGTSPQTVA HHSPFSSLLS 240 LAPGPQLVFY SPEGGGFAMK EAADHQFPVD NLDHSQGQLS LSSARSFLHP GSQG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-20 | 64 | 118 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 5e-20 | 64 | 118 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.3G186300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU956358 | 0.0 | EU956358.1 Zea mays clone 1561243 TCP family transcription factor containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961521.1 | 0.0 | transcription factor TCP13 isoform X1 | ||||
Refseq | XP_004961522.1 | 0.0 | transcription factor TCP13 isoform X1 | ||||
Refseq | XP_012700333.1 | 0.0 | transcription factor TCP13 isoform X1 | ||||
TrEMBL | K3Z8G3 | 0.0 | K3Z8G3_SETIT; Uncharacterized protein | ||||
STRING | Si022830m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2490 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60970.1 | 5e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.3G186300.1.p |