PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.3G180600.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

HB-PHD

Protein Properties

Length: 742aa MW: 81904.1 Da PI: 4.6396

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.3G180600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	35.9	1.3e-11	588	627	13	52
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + L e+F+ ++yps++ +e LA++lgLt rqV+ WF rR Sevir.3G180600.1.p 588 QKLHEHFKTEPYPSRSVKENLAEELGLTFRQVSKWFESRR 627 6899**********************************99 PP
2	PHD	43.5	7e-15	216	271	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ + +++++lCdg C++ fH++Cl+++l++e++peg wlC+ C++k Sevir.3G180600.1.p 216 FCANCGSkdVTLGNDIILCDGaCDRGFHQNCLNPPLRTEDIPEGdeGWLCPACDCK 271 7****64445****66*******************9*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	3.99E-13	206	274	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	1.0E-12	213	270	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	11.092	214	271	IPR019787	Zinc finger, PHD-finger
CDD	cd15504	6.47E-26	216	268	No hit	No description
SMART	SM00249	1.8E-10	216	269	IPR001965	Zinc finger, PHD-type
Pfam	PF00628	6.1E-12	216	271	IPR019787	Zinc finger, PHD-finger
PROSITE pattern	PS01359	0	217	268	IPR019786	Zinc finger, PHD-type, conserved site
Gene3D	G3DSA:1.10.10.60	1.4E-12	566	627	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.009	573	633	IPR001356	Homeobox domain
SMART	SM00389	1.4E-10	575	637	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.13E-11	577	633	IPR009057	Homeodomain-like
CDD	cd00086	1.82E-11	578	627	No hit	No description
Pfam	PF00046	4.9E-9	588	627	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 742 aa Download sequence Send to blast
MDKNTPCPIE GNGEVENGVS SSQIPETVEH QVLLSPSKTV QNNMGIRKNY KRAANRGKKG 60 SQGLTDKAYT LRSSDNNVRV LHGTSSSKTT STEHVQTPVQ PAAKRRKRGR PSNKSLSSNK 120 SSTDEFSQIR KRVRYILNRM NYEQSLIEAY ASEGWKNQSL DKIRPEKELE RAKAEILRCK 180 LRIREVFQNL DSLLSKGKID ESLFDSEGEI SCEDIFCANC GSKDVTLGND IILCDGACDR 240 GFHQNCLNPP LRTEDIPEGD EGWLCPACDC KIDCIDVIND LQGSDLSIDD SWEKVFPEAA 300 TMANGSNQDD AFDLPSDDSD DNDFEPNMPE EHVASKEEGS SEEEEDEDGG SDSDDSNFLT 360 SSDSDDSEPL TAKKKVDDLG LPSEDSEDDD YDPAGPDSDK DIQKKESNSD ESDFTSDSDD 420 FCEEIAKTGG HDEVSSPPLP DGKVDDMEKS TSQANTANSN DDHMETEMDQ SVVLPVSGRR 480 QTERLDYKKL YDEAYGEAPS NSSDDEEWSG KSTPRKGHEE SEADSPAGKS SRSTRIVHHS 540 DELTPQSAQK SLHPDSLHGS VDEKHEDLTS NGSNSTSKKG HFGPVINQKL HEHFKTEPYP 600 SRSVKENLAE ELGLTFRQVS KWFESRRHFT RAASSMKGIC PDNHSPENTN SPVATSKQLN 660 EPEGMEMEKP NACGNKDATI SRKVGSPKVG SRKNRRKNAS ASDVRGSKVD SAEDQVPGLD 720 LADKARQKAI QREMMKKKKG R*

Sequence ? help Back to Top

Protein Sequence Length: 742 aa Download sequence Send to blast

MDKNTPCPIE GNGEVENGVS SSQIPETVEH QVLLSPSKTV QNNMGIRKNY KRAANRGKKG  60
SQGLTDKAYT LRSSDNNVRV LHGTSSSKTT STEHVQTPVQ PAAKRRKRGR PSNKSLSSNK  120
SSTDEFSQIR KRVRYILNRM NYEQSLIEAY ASEGWKNQSL DKIRPEKELE RAKAEILRCK  180
LRIREVFQNL DSLLSKGKID ESLFDSEGEI SCEDIFCANC GSKDVTLGND IILCDGACDR  240
GFHQNCLNPP LRTEDIPEGD EGWLCPACDC KIDCIDVIND LQGSDLSIDD SWEKVFPEAA  300
TMANGSNQDD AFDLPSDDSD DNDFEPNMPE EHVASKEEGS SEEEEDEDGG SDSDDSNFLT  360
SSDSDDSEPL TAKKKVDDLG LPSEDSEDDD YDPAGPDSDK DIQKKESNSD ESDFTSDSDD  420
FCEEIAKTGG HDEVSSPPLP DGKVDDMEKS TSQANTANSN DDHMETEMDQ SVVLPVSGRR  480
QTERLDYKKL YDEAYGEAPS NSSDDEEWSG KSTPRKGHEE SEADSPAGKS SRSTRIVHHS  540
DELTPQSAQK SLHPDSLHGS VDEKHEDLTS NGSNSTSKKG HFGPVINQKL HEHFKTEPYP  600
SRSVKENLAE ELGLTFRQVS KWFESRRHFT RAASSMKGIC PDNHSPENTN SPVATSKQLN  660
EPEGMEMEKP NACGNKDATI SRKVGSPKVG SRKNRRKNAS ASDVRGSKVD SAEDQVPGLD  720
LADKARQKAI QREMMKKKKG R*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	692	697	KNRRKN

Functional Description ? help Back to Top
Source	Description
UniProt	Interacts with the shrunken (SHR) 26 bp feedback control element.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.3G180600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961485.1	0.0	homeobox protein HOX1A isoform X1
Swissprot	P46605	0.0	HOX1A_MAIZE; Homeobox protein HOX1A
TrEMBL	A0A368QG13	0.0	A0A368QG13_SETIT; Uncharacterized protein
STRING	Si021365m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4393	37	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	2e-86	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Link Out ? help Back to Top
Phytozome	Sevir.3G180600.1.p

Publications ? help Back to Top
Bellmann R,Werr W Zmhox1a, the product of a novel maize homeobox gene, interacts with the Shrunken 26 bp feedback control element. EMBO J., 1992. 11(9): p. 3367-74 [PMID:1354614]