PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.3G176100.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

C3H

Protein Properties

Length: 269aa MW: 29166.8 Da PI: 5.4076

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.3G176100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.2	1.2e-07	108	133	3	26
S---SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 3 telCrffartG...tCkyGdrCkFaHg 26 e+C++f+r C++G+ C+FaHg Sevir.3G176100.1.p 108 GEPCPDFRR-RpgaACPRGSACPFAHG 133 689**99.558***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.38	105	135	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.035	105	134	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-5	106	137	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-5	109	133	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	25	143	166	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MVSREHSHSY EHLVLDPAAL GSACSWADPA AVEIPPQLLA ALGEYLSAGR GDGDAAEAEA 60 EADDEFMMYE FKVRRCARAR SHDWTACPYA HPGEAARRRD PRRVAYTGEP CPDFRRRPGA 120 ACPRGSACPF AHGTFELWLH PSRYRTRPCR AGAACRRRVC FFAHAAAELR AASKDDGCSP 180 LSLSLSPKST LASLWESPPV SPVEGRVRWL DAIDEPSDAD AEVEELVLAM RELSFRKAAA 240 SAPVAAPVLP PVTEEDGPDL GWVSELVM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.3G176100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961434.1	0.0	zinc finger CCCH domain-containing protein 37
Swissprot	Q65X92	1e-139	C3H37_ORYSJ; Zinc finger CCCH domain-containing protein 37
TrEMBL	K3Z8T8	0.0	K3Z8T8_SETIT; Uncharacterized protein
STRING	Si022958m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11209	19	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03790.1	4e-35	C3H family protein

Link Out ? help Back to Top
Phytozome	Sevir.3G176100.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]